Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NAB20_RS02215 Genome accession   NZ_CP097869
Coordinates   546467..547831 (+) Length   454 a.a.
NCBI ID   WP_375605434.1    Uniprot ID   -
Organism   Flavobacterium davisii strain GX-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 541467..552831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAB20_RS02190 - 541978..542787 (-) 810 WP_088390763.1 glycogen/starch synthase -
  NAB20_RS02195 panC 542895..543743 (+) 849 WP_105195678.1 pantoate--beta-alanine ligase -
  NAB20_RS02200 panD 543758..544108 (+) 351 WP_088390767.1 aspartate 1-decarboxylase -
  NAB20_RS02205 - 544110..545072 (+) 963 WP_088390769.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  NAB20_RS02210 - 545195..546460 (+) 1266 WP_088390770.1 alpha/beta hydrolase -
  NAB20_RS02215 radA 546467..547831 (+) 1365 WP_375605434.1 DNA repair protein RadA Machinery gene
  NAB20_RS02220 - 547844..548359 (+) 516 WP_375605435.1 hypothetical protein -
  NAB20_RS02225 - 548368..550335 (+) 1968 WP_105195675.1 transglycosylase domain-containing protein -
  NAB20_RS02230 - 550400..552016 (+) 1617 WP_375605436.1 DUF4139 domain-containing protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50048.40 Da        Isoelectric Point: 5.7522

>NTDB_id=693151 NAB20_RS02215 WP_375605434.1 546467..547831(+) (radA) [Flavobacterium davisii strain GX-01]
MAKIKTSFFCQSCGTQFAKWQGQCTSCKEWNTLVEEIVQKEEKNNWKTDSSSSHKRVSKPLLVHEIDSTEEIRMNTTDGE
LNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLNLPYKTLYVSGEESQKQIKMRAERITAENNNCYILTETKTQNIFKQ
IETIQPDVVIIDSIQTLQTDYIESSAGSISQIKECTAELIKFAKETNTPVILIGHITKDGTIAGPKILEHMVDTVLQFEG
DRNHIYRILRSLKNRFGSTSELGIYEMLGSGLREVANPSEILISHKEEELSGTAIATTMEGMRPLMIEIQALVSTAVYGT
PQRSTTGYNAKRLNMILAVLEKRAGFRLGSKDVFLNITGGITVDDPAIDLAVVAAILSSNEDIPVGKDMCFAGEVGLSGE
IRPVNRIDQRIQEAEKLGFSTIFVSKYSKISLKNHQIAINLVAKIEDVVSELFG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=693151 NAB20_RS02215 WP_375605434.1 546467..547831(+) (radA) [Flavobacterium davisii strain GX-01]
ATGGCTAAAATTAAAACCTCTTTTTTTTGTCAAAGTTGTGGAACTCAATTTGCTAAATGGCAAGGTCAGTGCACATCTTG
TAAAGAATGGAATACCTTAGTTGAAGAAATTGTTCAAAAAGAAGAAAAAAATAATTGGAAAACCGATTCCTCCTCCTCCC
ATAAAAGAGTTTCCAAACCTCTTTTAGTTCATGAAATTGATTCTACAGAAGAAATTAGAATGAATACAACAGATGGAGAA
TTAAATCGGGTGTTAGGAGGTGGATTAGTTCCTGGTTCACTCACTTTGTTAGGAGGCGAACCAGGAATAGGTAAAAGCAC
TTTATTACTTCAAATATCACTCAATTTACCTTATAAAACATTATATGTATCGGGAGAAGAAAGCCAAAAGCAAATAAAAA
TGCGGGCGGAACGAATTACAGCCGAAAACAACAATTGCTATATACTAACAGAAACGAAGACTCAAAATATTTTCAAACAA
ATTGAAACTATTCAACCGGATGTTGTTATTATTGACTCTATACAAACTTTACAAACAGATTATATAGAATCATCCGCTGG
TAGCATTTCTCAAATAAAAGAATGCACTGCAGAGCTCATAAAATTTGCTAAAGAAACCAATACACCTGTCATTTTAATTG
GGCATATAACAAAAGACGGTACCATTGCAGGACCAAAAATCCTAGAGCACATGGTCGATACCGTATTACAATTTGAAGGC
GATCGAAATCATATTTACCGTATTTTACGATCACTCAAAAATCGTTTTGGTTCTACTTCAGAATTAGGAATTTATGAAAT
GCTAGGATCAGGGCTTAGAGAGGTTGCTAATCCCTCTGAAATATTAATATCCCACAAGGAAGAAGAATTATCGGGTACTG
CCATAGCCACAACCATGGAGGGCATGCGCCCTTTAATGATTGAAATACAGGCACTCGTTTCTACAGCCGTATATGGCACA
CCTCAAAGAAGCACTACTGGTTATAATGCCAAAAGACTCAATATGATACTAGCTGTTTTAGAAAAAAGAGCAGGATTCCG
ATTAGGATCTAAAGACGTTTTTTTGAATATAACAGGAGGAATTACAGTCGATGATCCTGCCATTGATCTGGCAGTTGTGG
CGGCTATACTTTCTTCTAACGAAGATATTCCCGTAGGAAAAGATATGTGTTTTGCAGGCGAAGTCGGTTTATCAGGTGAA
ATACGCCCTGTAAATAGAATTGACCAACGAATACAAGAAGCTGAAAAACTGGGTTTTTCAACCATATTTGTTTCTAAATA
CAGTAAAATATCACTAAAAAACCATCAAATAGCAATTAACCTAGTTGCAAAAATTGAAGACGTAGTAAGCGAATTATTTG
GATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-220)

Subunit ChlI of Mg-chelatase (ChlI)

(316-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

49.015

100

0.493
  radA Streptococcus mitis NCTC 12261

49.015

100

0.493
  radA Streptococcus mitis SK321

49.015

100

0.493
  radA Streptococcus pneumoniae TIGR4

49.015

100

0.493
  radA Streptococcus pneumoniae D39

49.015

100

0.493
  radA Streptococcus pneumoniae R6

49.015

100

0.493
  radA Bacillus subtilis subsp. subtilis str. 168

50.82

94.053

0.478