Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   LpnH3D14_RS14775 Genome accession   NZ_CP114576
Coordinates   3266064..3267314 (+) Length   416 a.a.
NCBI ID   WP_011947634.1    Uniprot ID   -
Organism   Legionella pneumophila strain H3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3261064..3272314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnH3D14_RS14740 (LpnH3D14_02969) - 3261373..3261672 (-) 300 WP_011947628.1 ArsR/SmtB family transcription factor -
  LpnH3D14_RS14745 (LpnH3D14_02971) - 3261925..3262269 (-) 345 WP_014844809.1 hypothetical protein -
  LpnH3D14_RS14750 (LpnH3D14_02972) - 3262386..3263015 (+) 630 WP_010948424.1 trimeric intracellular cation channel family protein -
  LpnH3D14_RS14755 (LpnH3D14_02973) - 3263225..3263719 (-) 495 WP_014844810.1 peptidylprolyl isomerase -
  LpnH3D14_RS14760 (LpnH3D14_02974) tgt 3263746..3264897 (-) 1152 WP_269565318.1 tRNA guanosine(34) transglycosylase Tgt -
  LpnH3D14_RS14765 (LpnH3D14_02975) - 3264959..3265450 (-) 492 WP_269565319.1 disulfide bond formation protein B -
  LpnH3D14_RS14770 (LpnH3D14_02976) - 3265447..3265875 (-) 429 WP_269565320.1 c-type cytochrome -
  LpnH3D14_RS14775 (LpnH3D14_02977) cqsA 3266064..3267314 (+) 1251 WP_011947634.1 quorum-sensing autoinducer LAI-1 synthase LqsA Regulator
  LpnH3D14_RS14780 (LpnH3D14_02978) - 3267396..3268421 (-) 1026 WP_042645991.1 response regulator -
  LpnH3D14_RS14785 (LpnH3D14_02979) - 3268703..3269266 (+) 564 WP_011947637.1 HdeD family acid-resistance protein -
  LpnH3D14_RS14790 (LpnH3D14_02980) - 3269354..3270643 (-) 1290 WP_027223978.1 sensor histidine kinase -
  LpnH3D14_RS14795 (LpnH3D14_02981) hemC 3271033..3271962 (+) 930 WP_040185909.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46051.55 Da        Isoelectric Point: 8.9834

>NTDB_id=693143 LpnH3D14_RS14775 WP_011947634.1 3266064..3267314(+) (cqsA) [Legionella pneumophila strain H3]
MSNTEYQTIDNETQYINGKEKHQNHAYPEYINHSMEKYYEGRVNKSWQGKHILKGKTPTANSLIFSSNDYLNISQHPQLI
KAQIAAMQKYGNGQMQSAVFLNNSSFLLSQCENKFSSFLNYSAALLTQSGWSANVGLIQTLAKYNTPVYLDFYAHMSFWS
GVKAARAKPIPFLHNSVDSLKKRIEHHGPGIIAVDSIYSTLGTISPLTAYADIARKFKCLLIVDESHSLGTHGSQGKGMV
AKLGLSSQIDIITASLAKALSGRGGIITGDRQLIEYIRYSSLPSIFSSALMPHDLAGFSASLEIITQEEWRRAKLQTNAD
FLREALSCEGINIGSSGSQIVPLVTGSEANTLWLRDELEKEDLFGAVFCSPATPKNKCLIRLSISAHHEKSDLLRVIECL
AKLARKRPDIPLFKGN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=693143 LpnH3D14_RS14775 WP_011947634.1 3266064..3267314(+) (cqsA) [Legionella pneumophila strain H3]
ATGAGCAATACAGAATACCAAACAATTGATAACGAGACTCAATATATCAATGGAAAAGAAAAACATCAAAACCATGCTTA
TCCTGAGTATATCAATCATTCCATGGAAAAATATTACGAGGGGCGAGTCAATAAATCCTGGCAAGGGAAACACATACTTA
AAGGCAAAACCCCGACTGCAAATTCACTGATTTTTTCGAGCAATGATTATTTAAACATCAGTCAACATCCGCAATTAATT
AAAGCGCAAATTGCTGCGATGCAAAAATATGGTAATGGTCAAATGCAATCTGCTGTATTTTTAAATAACAGCTCTTTTTT
GCTCAGCCAATGTGAAAATAAATTCAGTTCCTTTTTAAATTATTCTGCGGCCCTGCTCACTCAATCAGGCTGGAGCGCTA
ACGTTGGTCTCATACAAACCCTGGCCAAGTACAATACACCAGTGTATCTGGATTTTTATGCCCATATGTCTTTTTGGTCT
GGTGTAAAAGCAGCAAGAGCCAAACCTATACCGTTTCTACATAATTCAGTCGATTCACTAAAAAAACGAATTGAACACCA
TGGACCAGGAATAATTGCAGTAGATTCTATTTATAGTACGCTGGGTACGATTAGTCCATTGACTGCCTATGCTGACATTG
CAAGAAAATTCAAATGTTTACTCATCGTCGATGAATCTCATTCATTAGGTACGCATGGCTCGCAAGGCAAGGGAATGGTG
GCTAAACTGGGATTATCAAGCCAAATAGACATCATAACAGCAAGCCTGGCTAAAGCCTTATCAGGACGTGGAGGCATCAT
TACAGGGGATAGGCAACTTATAGAATATATCAGATATTCATCTCTGCCTTCTATTTTTAGTTCTGCTTTAATGCCTCATG
ATTTAGCAGGATTTAGCGCATCATTAGAAATTATTACTCAAGAAGAATGGAGAAGAGCAAAATTACAAACCAATGCTGAT
TTTTTACGAGAAGCCTTATCATGCGAAGGAATTAATATAGGAAGTAGTGGCTCTCAAATAGTCCCTTTAGTTACAGGCAG
CGAGGCTAACACGCTTTGGTTAAGGGATGAGTTAGAAAAAGAAGACCTCTTTGGAGCCGTGTTCTGTTCACCCGCCACTC
CCAAAAATAAATGCCTGATTCGTTTATCCATCAGTGCGCATCACGAAAAATCGGACTTGCTCAGAGTGATTGAGTGCTTG
GCCAAACTTGCAAGAAAAAGACCCGATATTCCTTTGTTTAAGGGTAATTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(63-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

44.892

89.423

0.401