Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M9O62_RS04645 Genome accession   NZ_CP097867
Coordinates   1009813..1011174 (+) Length   453 a.a.
NCBI ID   WP_060381512.1    Uniprot ID   A0AA94JPT2
Organism   Flavobacterium covae strain AH-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1004813..1016174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9O62_RS04620 - 1005323..1006132 (-) 810 WP_060381517.1 glycogen/starch synthase -
  M9O62_RS04625 panC 1006240..1007088 (+) 849 WP_060381516.1 pantoate--beta-alanine ligase -
  M9O62_RS04630 panD 1007103..1007453 (+) 351 WP_060381515.1 aspartate 1-decarboxylase -
  M9O62_RS04635 - 1007455..1008417 (+) 963 WP_060381514.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  M9O62_RS04640 - 1008541..1009806 (+) 1266 WP_376777407.1 alpha/beta hydrolase -
  M9O62_RS04645 radA 1009813..1011174 (+) 1362 WP_060381512.1 DNA repair protein RadA Machinery gene
  M9O62_RS04650 - 1011186..1011587 (+) 402 WP_376777408.1 hypothetical protein -
  M9O62_RS04655 - 1011625..1013592 (+) 1968 WP_376777409.1 transglycosylase domain-containing protein -
  M9O62_RS04660 - 1013658..1015280 (+) 1623 WP_060381509.1 DUF4139 domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50074.61 Da        Isoelectric Point: 5.9777

>NTDB_id=693142 M9O62_RS04645 WP_060381512.1 1009813..1011174(+) (radA) [Flavobacterium covae strain AH-01]
MAKIKTSFFCQSCGSQFAKWQGQCTSCKEWNTLVEEIVQKEEKITWKTESPTHKRVPKPLLVHEIDSTEEIRMNTTDGEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITTENDNCYILTETKTQNIFRQI
ETIEPDVVIIDSIQTLQTDYIESSAGSISQIKECTAELIKFAKETNTPVILIGHITKDGTIAGPKILEHMVDTVLQFEGD
RNHIYRILRSLKNRFGSTSELGIYEMLGSGLREVSNPSEILISHKNEELSGTAIATTMEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGSKDVFLNITGGITVDDPAIDLAVVAAILSSNEDISVGKDMCFAGEVGLSGEI
RPVNRIDQRIQEAEKLGFSTIFVSKYSKISLKNHQIAIKLVAKIEDVISELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=693142 M9O62_RS04645 WP_060381512.1 1009813..1011174(+) (radA) [Flavobacterium covae strain AH-01]
ATGGCCAAAATAAAAACCTCTTTTTTTTGTCAAAGCTGCGGCAGTCAATTTGCTAAATGGCAAGGACAATGTACATCTTG
TAAAGAATGGAATACTTTAGTTGAAGAAATTGTTCAAAAAGAAGAAAAAATTACTTGGAAAACCGAGTCTCCTACTCATA
AAAGAGTACCAAAGCCTCTTTTAGTTCATGAAATTGATTCTACGGAAGAAATTAGAATGAATACAACTGATGGGGAATTA
AACCGCGTTTTAGGTGGCGGATTAGTTCCAGGTTCGCTAACCTTATTAGGAGGTGAACCTGGTATTGGTAAGAGTACTTT
ATTACTTCAAATATCTCTTAAATTACCTTATAAAACGCTATATGTTTCAGGTGAAGAAAGCCAGAAACAGATAAAAATGC
GAGCAGAACGAATTACCACCGAAAATGATAATTGTTATATATTAACAGAAACCAAAACTCAAAACATTTTTAGGCAAATT
GAAACGATTGAACCCGATGTGGTTATAATAGACTCCATACAAACTTTACAAACGGATTATATAGAATCTTCAGCAGGCAG
TATTTCTCAAATTAAAGAATGTACCGCAGAGCTTATTAAATTTGCTAAAGAAACCAATACACCTGTTATTCTAATTGGTC
ATATAACAAAAGACGGCACCATTGCAGGACCTAAGATCTTAGAGCACATGGTAGACACCGTATTACAATTTGAAGGAGAT
CGAAATCATATTTATCGCATTTTACGATCACTCAAAAACCGTTTTGGCTCTACATCAGAACTAGGCATTTATGAAATGCT
TGGATCAGGGCTTAGAGAAGTCAGTAATCCTTCTGAAATATTAATATCTCATAAAAATGAAGAATTATCAGGCACCGCTA
TAGCCACAACCATGGAAGGTATGCGCCCTCTAATGATTGAAATACAAGCACTCGTTTCTACAGCCGTATATGGTACACCC
CAAAGAAGTACTACGGGTTATAATGCCAAAAGACTCAATATGATACTTGCTGTTTTAGAAAAAAGAGCAGGCTTCCGATT
AGGGTCTAAAGACGTTTTTTTAAATATTACAGGCGGAATTACAGTAGATGATCCAGCCATTGATCTAGCTGTTGTGGCTG
CTATACTTTCTTCCAACGAAGATATTTCAGTAGGAAAAGATATGTGTTTTGCAGGAGAAGTAGGCTTGTCAGGAGAAATA
CGCCCCGTTAATAGAATTGATCAACGAATACAAGAAGCGGAAAAACTTGGTTTTTCAACCATATTTGTATCTAAATATAG
TAAAATATCATTGAAAAATCATCAAATAGCAATAAAGCTAGTTGCCAAAATTGAAGATGTAATCAGTGAATTATTTGGAT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(315-425)

AAA domain (AAA_25)

(72-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.148

100

0.488
  radA Streptococcus mitis NCTC 12261

48.148

100

0.488
  radA Streptococcus pneumoniae Rx1

48.148

100

0.488
  radA Streptococcus mitis SK321

48.148

100

0.488
  radA Streptococcus pneumoniae R6

48.148

100

0.488
  radA Streptococcus pneumoniae TIGR4

48.148

100

0.488
  radA Bacillus subtilis subsp. subtilis str. 168

50.235

94.04

0.472