Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   M8C01_RS25680 Genome accession   NZ_CP097859
Coordinates   1841938..1843035 (-) Length   365 a.a.
NCBI ID   WP_033006726.1    Uniprot ID   -
Organism   Vibrio owensii strain GL-605     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1836938..1848035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS25660 - 1837013..1837468 (-) 456 WP_005442405.1 Lrp/AsnC family transcriptional regulator -
  M8C01_RS25665 - 1837618..1838544 (+) 927 WP_264406654.1 DMT family transporter -
  M8C01_RS25670 - 1838638..1839300 (+) 663 WP_264406656.1 PilZ domain-containing protein -
  M8C01_RS25675 luxQ 1839359..1841938 (-) 2580 WP_038893588.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  M8C01_RS25680 luxP 1841938..1843035 (-) 1098 WP_033006726.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  M8C01_RS25685 - 1843397..1843711 (-) 315 WP_199437944.1 GIY-YIG nuclease family protein -
  M8C01_RS25690 - 1843708..1844361 (-) 654 WP_009704768.1 YceH family protein -
  M8C01_RS25695 - 1844455..1844658 (-) 204 WP_264406664.1 hypothetical protein -
  M8C01_RS25700 - 1844897..1845211 (+) 315 WP_005442423.1 DUF496 family protein -
  M8C01_RS25705 - 1845335..1846660 (+) 1326 WP_038893586.1 MATE family efflux transporter -
  M8C01_RS25710 - 1846739..1847728 (-) 990 WP_264406667.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41533.98 Da        Isoelectric Point: 6.3162

>NTDB_id=693139 M8C01_RS25680 WP_033006726.1 1841938..1843035(-) (luxP) [Vibrio owensii strain GL-605]
MNKALLFSLISMVSFSPVTHATQVLNGYWAYQEFLDEFPEQRKLTNALAEAVRERPVPLSKTKKRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQINQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKYFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYEAAKASLAKHPDVDFIYACSTDVALGAVDALAELGRDDIMVNGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=693139 M8C01_RS25680 WP_033006726.1 1841938..1843035(-) (luxP) [Vibrio owensii strain GL-605]
ATGAATAAAGCGTTACTATTTTCCTTAATTTCTATGGTGAGTTTTTCTCCAGTTACCCACGCCACTCAAGTGTTGAATGG
GTACTGGGCATATCAAGAATTCTTAGATGAATTTCCTGAGCAGAGAAAACTGACCAATGCGTTGGCGGAAGCCGTTCGAG
AGCGTCCTGTTCCGCTTTCTAAAACCAAAAAGCGTCCACTCAAAATATCGGTTGTTTATCCAGGGCAACAAGTGTCCGAT
TACTGGGTAAGAAACATCGCTGCATTTGAAAAACGATTAGACAAGTTGAATATCAATTATCAAATCAACCAAGTATTTAC
ACGACCAAATGCCGATATTAAGCAACAGAGCTTGTCATTAATGGAGGCGCTTAAGAGCAAATCCGATTATTTGATTTTCA
CGCTTGATACGACGAGACATCGTAAATTCGTTGAGCACGTATTAGATTCCACCAACACCAAATTAATCTTACAAAATATC
ACCACGCCAGTGCGTGAATGGGATAAGCATCAGCCATTCTTATATGTTGGGTTCGACCACGCAGAAGGCAGTCGTGAACT
CGCAACAGAATTCGGAAAGTACTTCCCAAAACACACATATTACAGTGTGCTTTACTTTTCTGAAGGGTACATTAGCGACG
TAAGAGGTGACACTTTCATTCACCAAGTTAACCGTGACAATAACTTTGAGCTACAATCAGCGTACTACACGAAAGCAACC
AAGCAATCCGGCTATGAGGCCGCGAAGGCGAGTTTAGCGAAACACCCAGACGTTGATTTTATTTATGCGTGTTCCACCGA
TGTGGCCTTAGGTGCTGTTGATGCATTGGCTGAGTTGGGGCGCGACGACATTATGGTTAATGGATGGGGTGGAGGCTCTG
CTGAGCTAGACGCTATTCAAAAAGGCGATTTAGACATTACCGTCATGCGTATGAATGACGATACTGGCATCGCCATGGCA
GAAGCCATTAAGTGGGACTTGGAAGGAAAGCCAGTGCCAACCGTATACTCCGGTGACTTTGAAATTGTCACAAAGGCGGA
TTCACCGGAACGAATCGAAGCGCTTAAAAAGCGTGCATTTAGATATTCAGATAATTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.835

99.726

0.647