Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   M8C01_RS22345 Genome accession   NZ_CP097859
Coordinates   1069770..1070951 (-) Length   393 a.a.
NCBI ID   WP_264408182.1    Uniprot ID   -
Organism   Vibrio owensii strain GL-605     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1064770..1075951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS22330 - 1066032..1066580 (+) 549 WP_005437703.1 GNAT family N-acetyltransferase -
  M8C01_RS22335 - 1066648..1067265 (-) 618 WP_264408180.1 HAD family phosphatase -
  M8C01_RS22340 - 1067567..1069612 (+) 2046 WP_264408181.1 response regulator -
  M8C01_RS22345 cqsA 1069770..1070951 (-) 1182 WP_264408182.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  M8C01_RS22350 ylqF 1071361..1072305 (-) 945 WP_264408184.1 ribosome biogenesis GTPase YlqF -
  M8C01_RS22355 - 1072627..1073613 (-) 987 WP_264408186.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44063.11 Da        Isoelectric Point: 5.8728

>NTDB_id=693137 M8C01_RS22345 WP_264408182.1 1069770..1070951(-) (cqsA) [Vibrio owensii strain GL-605]
MSDKLKTKRLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQPDAVVMQSNDYLSLSHNQQIQKAHRDAISEHDDNVVMS
AIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMS
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAK
TFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEVIRLEKTLEVIKDADDKRTMLFNRAKELRTGLKQIGFSIRSESQ
IIALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDIDHVLTACQEAYNHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=693137 M8C01_RS22345 WP_264408182.1 1069770..1070951(-) (cqsA) [Vibrio owensii strain GL-605]
ATGAGTGATAAACTGAAAACGAAACGACTTCCTTCTTTTGTTGAGGAACGCCTGGACTTTTATATTCAAGATCTGATTGA
ACAGAACGAGAACCAAAAGCACTTGGTATTAGGGAAACGACCGCAACCCGACGCTGTGGTCATGCAGAGTAACGATTACT
TATCGTTATCTCATAACCAACAGATTCAAAAAGCTCACCGAGATGCGATATCTGAGCATGATGATAACGTCGTTATGTCT
GCGATTTTCTTGCAAGATGATGATTCGAAGCCTGCATTTGAAACGCAGCTTGCGGATTACGTCGGCATGGGGAGTTGCTT
GCTTTCCCAATCGGGATGGGCTGCGAATATAGGATTGTTGCAGACCATTTGTCCACCTGAAACGCCGGTCTATATCGACT
TCTTTGCGCATATGTCATTGTGGGAAGGTATTCGAGCCGCGGGAGCACAAGCGCATCCGTTCATGCACAACAACATGAGC
CACTTGCGCAAGCAGATCCAGCGTCATGGCTCAGGTGTTATCGTGGTAGATTCGGTCTATAGCACGATAGGCACGATCGC
CCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGATTGTGCTTTAGTGGTGGATGAATCCCACTCGTTAGGAACAC
ACGGGCCTAACGGCTCTGGCTTGGTAAAAGCGCTGGAACTCACTGATCAAGTAGATTTCATTACTGTCAGTCTGGCAAAA
ACCTTTGCTTATCGAGCAGGAGCGATTCTCGGCCCAGAAAAACTGGCACGAACGTTACCATTCGTTGCGTTCCCGGCCAT
TTTTAGTTCAACGGTTCTGCCACAAGAAGTCATTCGACTAGAGAAAACGCTCGAAGTGATTAAAGACGCCGATGATAAAC
GAACTATGTTGTTCAATCGCGCTAAAGAGCTCAGAACGGGCCTTAAGCAGATTGGTTTTAGTATCCGCAGCGAATCACAA
ATTATCGCGTTAGAGTGCGGTAGCGAGCGTAATACCGAGCGTGTACGTGATTTCTTGGAAGAACGTAATGTCTTTGGCGC
TGTATTTTGTCGCCCAGCAACGGGAAAGAATAAAAACATTATTCGATTCTCAATCAACGCCGACATGACGTCTCGTGACA
TTGACCATGTGCTGACAGCATGTCAGGAAGCGTATAACCATCCAGAACTAGAGTTTGTTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.474

98.728

0.567