Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   LpnH3D14_RS12205 Genome accession   NZ_CP114576
Coordinates   2722207..2723562 (-) Length   451 a.a.
NCBI ID   WP_374188635.1    Uniprot ID   -
Organism   Legionella pneumophila strain H3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2717207..2728562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnH3D14_RS12190 (LpnH3D14_02452) pilU 2717947..2719068 (-) 1122 WP_061469790.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LpnH3D14_RS12195 (LpnH3D14_02453) - 2719158..2721086 (-) 1929 WP_014844478.1 FAD/FMN-containing dehydrogenase -
  LpnH3D14_RS12200 (LpnH3D14_02454) - 2721374..2722210 (-) 837 WP_061640273.1 phytanoyl-CoA dioxygenase family protein -
  LpnH3D14_RS12205 (LpnH3D14_02455) radA/sms 2722207..2723562 (-) 1356 WP_374188635.1 DNA repair protein RadA Machinery gene
  LpnH3D14_RS12210 (LpnH3D14_02456) - 2723794..2724672 (+) 879 WP_269565430.1 lpg2327 family Dot/Icm T4SS effector -
  LpnH3D14_RS12215 (LpnH3D14_02457) - 2724935..2725318 (+) 384 WP_011947172.1 hypothetical protein -
  LpnH3D14_RS12220 (LpnH3D14_02458) - 2725512..2725742 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  LpnH3D14_RS12225 (LpnH3D14_02459) - 2725723..2726619 (+) 897 WP_027219254.1 polyprenyl synthetase family protein -
  LpnH3D14_RS12230 (LpnH3D14_02460) bioC 2726663..2727517 (-) 855 WP_011947175.1 malonyl-ACP O-methyltransferase BioC -
  LpnH3D14_RS12235 (LpnH3D14_02461) comFC 2727561..2728265 (+) 705 WP_013101755.1 ComF family protein Machinery gene

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49019.72 Da        Isoelectric Point: 7.7495

>NTDB_id=693133 LpnH3D14_RS12205 WP_374188635.1 2722207..2723562(-) (radA/sms) [Legionella pneumophila strain H3]
MMKVKTQFVCNQCAAIFKQWAGQCTQCGAWNSIVEEGIVPENKTSRSGQWANQRSVITAVEDVVMDKIVRMDCGISELNR
VLGGGLVYGSVVLIGGDPGIGKSTLLLQTLANLSMQETVLYVTGEESLQQVAMRAQRLGLPLAGLRLLAETQVESIIAQA
QKEKPRIIVVDSVQTIFTEAISSAPGGVSQVRESAAQLVRYAKMTNTAIFLVGHVTKEGTLAGPRVLEHMVDSVLYFEGQ
NDSRFRVIRAIKNRFGAVNELGVFAMTDKGLKEVANPSAIFLSRQPEPTPGSAVMVTWEGSRPMLVEVQALVDEAHGQQA
KRVTAGLEHNRLAILLAVLHRHGGIATYDQDVFINVVGGVKVTETASDLALLAAVISSLRNRIFDSETIIFGEVGLAGEI
RPVQSGQERIKEAIKHGFKRAIVPFANAPKQQLDSMMVEPVKHLRDVLEKM

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=693133 LpnH3D14_RS12205 WP_374188635.1 2722207..2723562(-) (radA/sms) [Legionella pneumophila strain H3]
ATTATGAAAGTGAAAACCCAGTTTGTTTGTAATCAATGCGCGGCCATTTTTAAACAGTGGGCAGGACAATGCACTCAATG
TGGCGCCTGGAATTCCATTGTTGAAGAAGGGATTGTGCCTGAAAACAAGACTTCACGAAGTGGGCAATGGGCTAATCAGC
GCTCTGTCATCACTGCTGTTGAAGACGTCGTCATGGACAAAATAGTACGTATGGATTGTGGTATATCCGAGCTCAACCGG
GTTTTGGGAGGGGGGCTGGTTTATGGCTCGGTTGTTTTGATTGGAGGAGATCCGGGGATCGGTAAATCCACCTTACTGTT
GCAAACGCTGGCTAATTTATCTATGCAAGAAACAGTATTGTATGTGACGGGGGAAGAGTCATTACAACAAGTTGCCATGC
GTGCCCAAAGATTGGGGCTACCTTTGGCCGGATTGCGGCTATTGGCAGAAACTCAGGTTGAATCCATCATTGCTCAAGCC
CAAAAGGAAAAACCGCGAATTATTGTCGTCGATTCAGTACAAACGATATTCACTGAAGCCATAAGTTCTGCTCCGGGAGG
AGTTAGTCAAGTCAGGGAATCAGCAGCACAATTGGTGCGTTATGCCAAGATGACCAATACGGCCATCTTCCTGGTAGGGC
ATGTCACCAAGGAAGGAACATTAGCCGGGCCTCGGGTGTTAGAACATATGGTTGATAGTGTTCTCTATTTTGAGGGGCAA
AATGATAGCCGCTTCAGAGTCATTCGCGCCATTAAAAATCGTTTTGGCGCTGTCAATGAATTAGGTGTATTTGCGATGAC
TGACAAAGGCCTGAAGGAGGTAGCCAACCCTTCAGCTATTTTTTTATCTCGCCAGCCCGAACCTACGCCTGGCAGTGCAG
TGATGGTGACTTGGGAAGGATCAAGACCCATGTTGGTAGAAGTACAAGCATTGGTTGATGAGGCCCATGGTCAGCAAGCG
AAACGCGTTACTGCGGGTCTTGAGCATAATCGCTTGGCCATTTTGTTAGCTGTTTTACACCGTCATGGAGGTATCGCTAC
TTACGATCAGGATGTTTTTATCAATGTAGTCGGGGGGGTGAAAGTGACTGAAACAGCGAGTGATTTGGCTTTGTTGGCTG
CAGTGATTTCAAGTTTACGTAATCGTATATTTGATAGTGAAACTATCATATTCGGTGAAGTGGGATTAGCTGGGGAAATC
AGACCAGTGCAAAGTGGTCAAGAACGCATTAAGGAGGCTATAAAACATGGATTCAAGCGTGCTATAGTCCCTTTTGCCAA
CGCTCCCAAACAGCAACTCGATTCCATGATGGTCGAGCCAGTTAAACATTTGCGAGATGTATTGGAGAAAATGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(329-427)

AAA domain (AAA_25)

(75-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.499

96.009

0.466
  radA Streptococcus mitis SK321

48.349

94.013

0.455
  radA Streptococcus pneumoniae Rx1

48.349

94.013

0.455
  radA Streptococcus pneumoniae D39

48.349

94.013

0.455
  radA Streptococcus pneumoniae R6

48.349

94.013

0.455
  radA Streptococcus pneumoniae TIGR4

48.349

94.013

0.455
  radA Streptococcus mitis NCTC 12261

48.113

94.013

0.452