Detailed information NTG0693118

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: M8C01_RS14765
• Genome accession: NZ_CP097858
• Coordinates: 3217407..3218390 (-)
• Length: 327 a.a.
• NCBI ID: WP_009707587.1
• Uniprot ID: A0A0C1ZGB1
• Organism: Vibrio owensii strain GL-605
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3212407..3223390

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M8C01_RS14750	recA	3212945..3213988 (-)	1044	WP_005436413.1	recombinase RecA	Machinery gene
M8C01_RS14755	pncC	3214189..3214671 (-)	483	WP_264403782.1	nicotinamide-nucleotide amidase	-
M8C01_RS14760	mutS	3214757..3217318 (+)	2562	WP_264403783.1	DNA mismatch repair protein MutS	-
M8C01_RS14765	rpoS	3217407..3218390 (-)	984	WP_009707587.1	RNA polymerase sigma factor RpoS	Regulator
M8C01_RS14770	-	3218471..3219394 (-)	924	WP_264403784.1	peptidoglycan DD-metalloendopeptidase family protein	-
M8C01_RS14775	-	3219409..3220035 (-)	627	WP_005436423.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
M8C01_RS14780	surE	3220035..3220811 (-)	777	WP_005436425.1	5'/3'-nucleotidase SurE	-
M8C01_RS14785	truD	3220811..3221854 (-)	1044	WP_264403786.1	tRNA pseudouridine(13) synthase TruD	-
M8C01_RS14790	ispF	3221900..3222376 (-)	477	WP_009707591.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
M8C01_RS14795	ispD	3222391..3223098 (-)	708	WP_264405724.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
M8C01_RS14800	ftsB	3223100..3223381 (-)	282	WP_005436434.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37197.02 Da
• Isoelectric Point: 4.7200

>NTDB_id=693118 M8C01_RS14765 WP_009707587.1 3217407..3218390(-) (rpoS) [Vibrio owensii strain GL-605]
MSISNTVTKVEEFDYDNAQSEGISNEPAKTSTGTKSAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=693118 M8C01_RS14765 WP_009707587.1 3217407..3218390(-) (rpoS) [Vibrio owensii strain GL-605]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGACTACGATAATGCACAATCGGAAGGCATTTCAAACGAACC
TGCAAAAACATCTACTGGAACCAAATCAGCGGCGCGCGAAGAATTTGACGCGAGCAGTAAGAGCTTAGACGCAACACAGC
TCTACTTGGGCGAGATTGGTTTCTCACCACTACTCACTGCAGAAGAAGAAGTACTTTATGCGCGACGTGCGCTGCGCGGC
GATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGTAACCGTGG
TCTTGCACTTCTTGATCTCATCGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAGAACGCGGTT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATCGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTACGCCTCAACGAGCGTATCA
GTTCTGTTGACACACCAATCGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATCCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTTTGCTTGGTTACGAGCCATCTACGCTTGAAGAAGTGGGACGTGAAATTGGTCTAACACGCG
AACGCGTTCGTCAGATCCAAGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGATGATTAG

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A0C1ZGB1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.859