Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   M8C01_RS14605 Genome accession   NZ_CP097858
Coordinates   3190039..3190557 (-) Length   172 a.a.
NCBI ID   WP_005438047.1    Uniprot ID   A0A812FIS6
Organism   Vibrio owensii strain GL-605     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3185039..3195557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS14580 rimM 3185083..3185631 (-) 549 WP_005438038.1 ribosome maturation factor RimM -
  M8C01_RS14585 rpsP 3185662..3185910 (-) 249 WP_005438039.1 30S ribosomal protein S16 -
  M8C01_RS14590 ffh 3186121..3187509 (-) 1389 WP_005438041.1 signal recognition particle protein -
  M8C01_RS14595 - 3187723..3188517 (+) 795 WP_005438043.1 inner membrane protein YpjD -
  M8C01_RS14600 - 3188672..3189952 (+) 1281 WP_171370495.1 HlyC/CorC family transporter -
  M8C01_RS14605 luxS 3190039..3190557 (-) 519 WP_005438047.1 S-ribosylhomocysteine lyase Regulator
  M8C01_RS14610 - 3190649..3191212 (-) 564 WP_012128887.1 hypothetical protein -
  M8C01_RS14615 gshA 3191274..3192842 (-) 1569 WP_005438052.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19116.87 Da        Isoelectric Point: 4.7373

>NTDB_id=693115 M8C01_RS14605 WP_005438047.1 3190039..3190557(-) (luxS) [Vibrio owensii strain GL-605]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGESVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=693115 M8C01_RS14605 WP_005438047.1 3190039..3190557(-) (luxS) [Vibrio owensii strain GL-605]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGCATGAATGCACCAGCAGTCCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCGCCAAACAAAGACATCCTTTCTGAGAAAGGGATTC
ATACATTAGAACACTTGTACGCAGGCTTTATGCGTAACCACTTAAATGGTGAGAGTGTTGAGATCATTGATATTTCACCA
ATGGGCTGTCGCACTGGTTTCTACATGAGTTTGATTGGCACGCCTTCAGAGCAACAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGATGTTTTGAAAGTAGAAAACCAAAACAAGATCCCTGAGTTGAACGAATACCAATGTGGCACGGCAGCAATGC
ACTCTCTGGATGAAGCAAAGCAAATCGCGAAGAACATTCTAGAAGCCGGTGTATCAGTCAATAAGAATGATGAGCTTGCG
CTGCCAGAGTCAATGCTTAAAGAACTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FIS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866