Detailed information NTG0693106

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: M8C01_RS06960
• Genome accession: NZ_CP097858
• Coordinates: 1558872..1560293 (-)
• Length: 473 a.a.
• NCBI ID: WP_199461435.1
• Uniprot ID: -
• Organism: Vibrio owensii strain GL-605
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1553872..1565293

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M8C01_RS06935	purT	1554478..1555653 (-)	1176	WP_264405069.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
M8C01_RS06940	-	1555861..1556559 (+)	699	WP_009705895.1	hypothetical protein	-
M8C01_RS06945	cdd	1556607..1557494 (-)	888	WP_264405071.1	cytidine deaminase	-
M8C01_RS06950	-	1557760..1558437 (-)	678	WP_264405072.1	LrgB family protein	-
M8C01_RS06955	-	1558439..1558813 (-)	375	WP_005439820.1	CidA/LrgA family protein	-
M8C01_RS06960	sbcB	1558872..1560293 (-)	1422	WP_199461435.1	exodeoxyribonuclease I	Machinery gene
M8C01_RS06965	-	1560456..1561136 (-)	681	WP_264405075.1	DUF1826 domain-containing protein	-
M8C01_RS06970	-	1561364..1562737 (-)	1374	WP_264405076.1	L-cystine transporter	-
M8C01_RS06975	-	1562930..1563625 (-)	696	WP_264405078.1	NAD(P)H-binding protein	-
M8C01_RS06980	-	1564302..1564913 (+)	612	WP_017190319.1	flavin reductase family protein	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54541.84 Da
• Isoelectric Point: 4.9293

>NTDB_id=693106 M8C01_RS06960 WP_199461435.1 1558872..1560293(-) (sbcB) [Vibrio owensii strain GL-605]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFYSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKREELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=693106 M8C01_RS06960 WP_199461435.1 1558872..1560293(-) (sbcB) [Vibrio owensii strain GL-605]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAATTCGCAGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGCCCACCTGCTG
ATTATCTCCCTTCACCAGAAGCCGCTTTGATCACTGGTATTACGCCACAAAAAGCCATGCAAGAGGGCCTACCTGAGCCT
GAGTTTATCGCCAAGATCCACGCTGAGCTTTCTAAACCAAACACAACAAGCCTTGGTTACAACAGCATCCGTTTCGATGA
TGAAGTCACACGTTACACTTGTTACCGCAACTTTATCGACCCATATGCGTGGAGCTGGCAAAATGGCAACTCGCGCTGGG
ATTTGCTCGATGTGATGCGAGCGTGTCATGCCCTTCGTCCTGAAGGTGTGGAATGGCCGGAGAATGATGAAGGCTTTACG
AGTTTCAAGCTTGAGCATTTATCAGTGGCTAACGGTATTGAACACAGCAATGCTCACGATGCGATGGCAGATGTCATTGC
TACTATTGAGATGGCGAAGAAAGTCAAAGCCGCGCAACCAAAGCTGTTTGATTACTTTTACTCAATGCGTAACAAGCGCA
AGCTGAACGAGTTAGTCGATATTGTAAACATGACGCCATTGATGCACGTGTCAGGCATGTTGGGACGTGAGTGCCAATAC
ACAAGCTGGATTGTTCCAGTGGCTTGGCATCCAACCAACAACAACGCCGTCATCACGATTGATTTAGCCAAAGATCCTCA
GCCAATCCTTGAGCTTTCAGCAGAAGAGTTGAAAGAGCGTTTGTACACCAAGCGTGAAGAACTGGGTGACTTACTGCCTG
TACCCGTAAAGCTCGTGCATCTGAACAAGTGCCCTATTCTTGCTCCAGCTAAAACGTTAACGGCAGAGAACGCAGAAGTA
ATTGGAATCGACCGTCAGAAATGTTTGAGTAATCTAGCGTTGCTGCGTCAACACCCAGAGATCCGTGAGAAACTAATTAG
TCTATTCTCTATTGAGCGTGAGTTCGAAAAGAGCGATGATGTGGATACGCAACTGTACGATGGCTTCTTTTCACCAGCAG
ATCGCGCAGCGATGGACATCATTCGTGAAACAGACCCAAATAACCTTGCTGCGCTGGATATTGAGTTTGATGACAAACGC
ATCAAGCCGTTGCTATTCCGTTACCGTGCCCGTCACTACGCAGGCACACTGGATGAACAAGAACAAAGACGTTGGGCACA
ACACTGTCGTGAAGTTTTCGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCGATACTAAAATCCGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.493	100	0.795