Detailed information NTG0693104

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LpnH3D14_RS06585
• Genome accession: NZ_CP114576
• Coordinates: 1426568..1427593 (+)
• Length: 341 a.a.
• NCBI ID: WP_011946339.1
• Uniprot ID: -
• Organism: Legionella pneumophila strain H3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1421568..1432593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LpnH3D14_RS06555 (LpnH3D14_01312)	-	1421999..1422316 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
LpnH3D14_RS06560 (LpnH3D14_01313)	-	1422353..1422724 (+)	372	WP_011946334.1	protease inhibitor I42 family protein	-
LpnH3D14_RS06565 (LpnH3D14_01314)	-	1422772..1424496 (-)	1725	WP_011946335.1	NAD-dependent malic enzyme	-
LpnH3D14_RS06570 (LpnH3D14_01315)	-	1424576..1424959 (+)	384	WP_011946336.1	hypothetical protein	-
LpnH3D14_RS06575 (LpnH3D14_01316)	surE	1424962..1425720 (+)	759	WP_011946337.1	5'/3'-nucleotidase SurE	-
LpnH3D14_RS06580 (LpnH3D14_01317)	-	1425739..1426482 (+)	744	WP_040184803.1	peptidoglycan DD-metalloendopeptidase family protein	-
LpnH3D14_RS06585 (LpnH3D14_01318)	rpoS	1426568..1427593 (+)	1026	WP_011946339.1	RNA polymerase sigma factor RpoS	Regulator
LpnH3D14_RS06590 (LpnH3D14_01319)	hmgA	1427693..1428943 (-)	1251	WP_011946340.1	homogentisate 1,2-dioxygenase	-
LpnH3D14_RS06595 (LpnH3D14_01320)	-	1429091..1429834 (+)	744	WP_011946341.1	YebC/PmpR family DNA-binding transcriptional regulator	-
LpnH3D14_RS06600 (LpnH3D14_01321)	ruvC	1429834..1430358 (+)	525	WP_011946342.1	crossover junction endodeoxyribonuclease RuvC	-
LpnH3D14_RS06605 (LpnH3D14_01322)	ruvA	1430355..1430954 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
LpnH3D14_RS06610 (LpnH3D14_01323)	-	1431006..1431326 (+)	321	WP_011946343.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39467.72 Da
• Isoelectric Point: 4.3705

>NTDB_id=693104 LpnH3D14_RS06585 WP_011946339.1 1426568..1427593(+) (rpoS) [Legionella pneumophila strain H3]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEDLDEFPEFTDDEVFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=693104 LpnH3D14_RS06585 WP_011946339.1 1426568..1427593(+) (rpoS) [Legionella pneumophila strain H3]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGATCTTGATGAATTTCCAGAGTTTACTGATGATGAAG
TTTTTCCTTCATTTCAGCGCGGGAAAAACATTGCTAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGCTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTGGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548