Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   M6E97_RS29985 Genome accession   NZ_CP097857
Coordinates   6460692..6461216 (+) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas sp. B111     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6455692..6466216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6E97_RS29965 (M6E97_29925) pilR 6456954..6458291 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  M6E97_RS29970 (M6E97_29930) thiO 6458337..6459431 (-) 1095 WP_003141551.1 glycine oxidase ThiO -
  M6E97_RS29975 (M6E97_29935) - 6459571..6460071 (+) 501 WP_016254062.1 GspH/FimT family pseudopilin -
  M6E97_RS29980 (M6E97_29940) - 6460194..6460682 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  M6E97_RS29985 (M6E97_29945) pilV 6460692..6461216 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  M6E97_RS29990 (M6E97_29950) - 6461225..6462040 (+) 816 WP_016254061.1 PilW family protein -
  M6E97_RS29995 (M6E97_29955) - 6462037..6462642 (+) 606 WP_003116263.1 pilus assembly PilX family protein -
  M6E97_RS30000 (M6E97_29960) - 6462656..6466132 (+) 3477 WP_023100239.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=693092 M6E97_RS29985 WP_003116261.1 6460692..6461216(+) (pilV) [Pseudomonas sp. B111]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=693092 M6E97_RS29985 WP_003116261.1 6460692..6461216(+) (pilV) [Pseudomonas sp. B111]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598