Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   M6E97_RS08120 Genome accession   NZ_CP097857
Coordinates   1690764..1691399 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas sp. B111     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1685764..1696399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6E97_RS08090 (M6E97_08085) murB 1686862..1687881 (-) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -
  M6E97_RS08095 (M6E97_08090) - 1687878..1688342 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  M6E97_RS08100 (M6E97_08095) kdsB 1688342..1689106 (-) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M6E97_RS08105 (M6E97_08100) - 1689106..1689291 (-) 186 WP_003091157.1 Trm112 family protein -
  M6E97_RS08110 (M6E97_08105) lpxK 1689329..1690327 (-) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  M6E97_RS08115 (M6E97_08110) - 1690327..1690767 (-) 441 WP_003091161.1 ExbD/TolR family protein -
  M6E97_RS08120 (M6E97_08115) exbB 1690764..1691399 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  M6E97_RS08125 (M6E97_08120) comA 1691472..1693697 (-) 2226 WP_033938021.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M6E97_RS08130 (M6E97_08125) - 1693828..1694361 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  M6E97_RS08135 (M6E97_08130) - 1694449..1695693 (-) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=693067 M6E97_RS08120 WP_003091163.1 1690764..1691399(-) (exbB) [Pseudomonas sp. B111]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=693067 M6E97_RS08120 WP_003091163.1 1690764..1691399(-) (exbB) [Pseudomonas sp. B111]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81