Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   M8779_RS09215 Genome accession   NZ_CP097846
Coordinates   1759046..1759645 (+) Length   199 a.a.
NCBI ID   WP_003687354.1    Uniprot ID   A0AA44U8R8
Organism   Neisseria gonorrhoeae strain AT159     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1754046..1764645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8779_RS09200 (M8779_09195) yihA 1754630..1755259 (+) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  M8779_RS09205 (M8779_09200) - 1755380..1757776 (-) 2397 WP_003690571.1 penicillin-binding protein 1A -
  M8779_RS09210 (M8779_09205) - 1757928..1759043 (+) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  M8779_RS09215 (M8779_09210) pilN 1759046..1759645 (+) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  M8779_RS09220 (M8779_09215) pilO 1759646..1760293 (+) 648 WP_047922703.1 type 4a pilus biogenesis protein PilO -
  M8779_RS09225 (M8779_09220) pilP 1760311..1760856 (+) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  M8779_RS09230 (M8779_09225) pilQ 1760875..1763070 (+) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22183.53 Da        Isoelectric Point: 9.8898

>NTDB_id=693003 M8779_RS09215 WP_003687354.1 1759046..1759645(+) (pilN) [Neisseria gonorrhoeae strain AT159]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=693003 M8779_RS09215 WP_003687354.1 1759046..1759645(+) (pilN) [Neisseria gonorrhoeae strain AT159]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975