Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | M8779_RS04405 | Genome accession | NZ_CP097846 |
| Coordinates | 845208..846953 (+) | Length | 581 a.a. |
| NCBI ID | WP_003688652.1 | Uniprot ID | A0AA44U7G6 |
| Organism | Neisseria gonorrhoeae strain AT159 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 810022..885082 | 845208..846953 | within | 0 |
| IS/Tn | 847640..848641 | 845208..846953 | flank | 687 |
Gene organization within MGE regions
Location: 810022..885082
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M8779_RS04235 (M8779_04225) | - | 810022..811092 (-) | 1071 | WP_003693067.1 | integrase arm-type DNA-binding domain-containing protein | - |
| M8779_RS04240 (M8779_04230) | - | 811301..812080 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| M8779_RS04245 (M8779_04235) | - | 812672..812881 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| M8779_RS04250 (M8779_04240) | dinB | 812980..814038 (+) | 1059 | WP_003695315.1 | DNA polymerase IV | - |
| M8779_RS04255 (M8779_04245) | rep | 814108..816123 (-) | 2016 | WP_012503651.1 | DNA helicase Rep | - |
| M8779_RS04260 (M8779_04250) | aroD | 816143..816907 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| M8779_RS04265 (M8779_04255) | recA | 817107..818153 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| M8779_RS04270 (M8779_04260) | - | 818806..819141 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| M8779_RS04275 (M8779_04265) | dnaX | 819222..821345 (-) | 2124 | WP_003691207.1 | DNA polymerase III subunit gamma/tau | - |
| M8779_RS04280 (M8779_04270) | mutL | 821440..823416 (-) | 1977 | WP_003688688.1 | DNA mismatch repair endonuclease MutL | - |
| M8779_RS04285 (M8779_04275) | - | 823560..823745 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| M8779_RS04290 (M8779_04280) | - | 823756..824424 (+) | 669 | WP_003688686.1 | O-methyltransferase | - |
| M8779_RS04295 (M8779_04285) | - | 824424..825137 (+) | 714 | WP_050154366.1 | tol-pal system YbgF family protein | - |
| M8779_RS04300 (M8779_04290) | purE | 825185..825670 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| M8779_RS04305 (M8779_04295) | - | 825882..826747 (-) | 866 | Protein_840 | transposase | - |
| M8779_RS04310 (M8779_04300) | - | 827064..827429 (+) | 366 | Protein_841 | transposase | - |
| M8779_RS04315 (M8779_04305) | - | 827592..828500 (+) | 909 | WP_003688683.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| M8779_RS04320 (M8779_04310) | - | 828656..829312 (-) | 657 | WP_003688682.1 | response regulator transcription factor | - |
| M8779_RS04325 (M8779_04315) | - | 829309..831078 (-) | 1770 | WP_003688681.1 | histidine kinase | - |
| M8779_RS04330 (M8779_04320) | - | 831285..831899 (+) | 615 | WP_047917856.1 | molybdenum cofactor guanylyltransferase | - |
| M8779_RS04335 (M8779_04325) | - | 832062..832679 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| M8779_RS04340 (M8779_04330) | - | 832687..833550 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| M8779_RS04345 (M8779_04335) | - | 833563..833997 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| M8779_RS04350 (M8779_04340) | rpe | 834143..834826 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| M8779_RS04355 (M8779_04345) | ruvB | 835071..836102 (-) | 1032 | WP_003691202.1 | Holliday junction branch migration DNA helicase RuvB | - |
| M8779_RS04360 (M8779_04350) | - | 836186..836494 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| M8779_RS04365 (M8779_04355) | - | 836912..838144 (-) | 1233 | WP_003706239.1 | multifunctional CCA addition/repair protein | - |
| M8779_RS04370 (M8779_04360) | - | 838223..839851 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| M8779_RS04375 (M8779_04365) | - | 840001..840375 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| M8779_RS04380 (M8779_04370) | - | 840424..841962 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| M8779_RS04385 (M8779_04375) | recR | 842029..842646 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| M8779_RS04390 (M8779_04380) | - | 842702..842980 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| M8779_RS04395 (M8779_04385) | - | 843206..844453 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| M8779_RS04400 (M8779_04390) | lolD | 844446..845141 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| M8779_RS04405 (M8779_04395) | recD | 845208..846953 (+) | 1746 | WP_003688652.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| M8779_RS04410 (M8779_04400) | - | 847025..847671 (-) | 647 | Protein_861 | class I SAM-dependent methyltransferase | - |
| M8779_RS04415 (M8779_04405) | - | 847679..848641 (+) | 963 | WP_252295711.1 | transposase | - |
| M8779_RS04420 (M8779_04410) | - | 848774..849229 (-) | 456 | Protein_863 | methyltransferase | - |
| M8779_RS04425 (M8779_04415) | lon | 849481..851943 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| M8779_RS04430 (M8779_04420) | - | 852125..852394 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| M8779_RS04435 (M8779_04425) | - | 852570..853004 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| M8779_RS04440 (M8779_04430) | - | 852997..854304 (-) | 1308 | WP_003688637.1 | homoserine dehydrogenase | - |
| M8779_RS04445 (M8779_04435) | - | 854500..854871 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| M8779_RS04450 (M8779_04440) | - | 854948..856870 (+) | 1923 | WP_252295695.1 | ATP-binding cassette domain-containing protein | - |
| M8779_RS04455 (M8779_04445) | - | 856857..857252 (+) | 396 | WP_010358122.1 | hypothetical protein | - |
| M8779_RS04460 (M8779_04450) | - | 857343..857855 (+) | 513 | WP_003693093.1 | hypothetical protein | - |
| M8779_RS04465 (M8779_04455) | - | 858285..858980 (-) | 696 | WP_041421278.1 | DUF4400 domain-containing protein | - |
| M8779_RS04470 (M8779_04460) | traD | 858970..861012 (-) | 2043 | WP_012503640.1 | type IV conjugative transfer system coupling protein TraD | - |
| M8779_RS04475 (M8779_04465) | mobH | 861009..863561 (-) | 2553 | WP_012503639.1 | MobH family relaxase | - |
| M8779_RS04480 (M8779_04470) | - | 863558..863977 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| M8779_RS04485 (M8779_04475) | - | 864488..864949 (+) | 462 | WP_012503638.1 | lytic transglycosylase domain-containing protein | - |
| M8779_RS04490 (M8779_04480) | - | 864919..865440 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| M8779_RS04495 (M8779_04485) | traA | 865496..865792 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| M8779_RS04500 (M8779_04490) | traL | 865814..866095 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| M8779_RS04505 (M8779_04495) | - | 866092..866757 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| M8779_RS04510 (M8779_04500) | - | 866759..867493 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| M8779_RS04515 (M8779_04505) | - | 867495..868808 (+) | 1314 | WP_003697090.1 | TrbI/VirB10 family protein | - |
| M8779_RS04520 (M8779_04510) | - | 868818..869537 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| M8779_RS04525 (M8779_04515) | - | 869534..870115 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| M8779_RS04530 (M8779_04520) | traC | 870125..872701 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| M8779_RS04535 (M8779_04525) | - | 872729..873277 (+) | 549 | WP_003695274.1 | hypothetical protein | - |
| M8779_RS04540 (M8779_04530) | - | 873277..873822 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| M8779_RS04545 (M8779_04535) | - | 873831..874487 (+) | 657 | WP_003693128.1 | hypothetical protein | - |
| M8779_RS04550 (M8779_04540) | - | 874484..875602 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| M8779_RS04555 (M8779_04545) | trbC | 875617..876369 (+) | 753 | WP_003699946.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| M8779_RS04560 (M8779_04550) | - | 876366..877610 (+) | 1245 | WP_003695263.1 | hypothetical protein | - |
| M8779_RS04565 (M8779_04555) | traN | 877649..879190 (+) | 1542 | WP_226876101.1 | conjugal transfer protein TraN | - |
| M8779_RS04570 (M8779_04560) | - | 879177..879602 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| M8779_RS04575 (M8779_04565) | - | 879614..880390 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| M8779_RS04580 (M8779_04570) | - | 880562..882073 (+) | 1512 | WP_041421275.1 | conjugal transfer protein TraH | - |
| M8779_RS04585 (M8779_04575) | - | 882080..885082 (+) | 3003 | WP_012503630.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63039.83 Da Isoelectric Point: 6.0083
>NTDB_id=692990 M8779_RS04405 WP_003688652.1 845208..846953(+) (recD) [Neisseria gonorrhoeae strain AT159]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=692990 M8779_RS04405 WP_003688652.1 845208..846953(+) (recD) [Neisseria gonorrhoeae strain AT159]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.828 |
100 |
0.998 |