Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   M9H69_RS06875 Genome accession   NZ_CP097843
Coordinates   1330741..1333002 (+) Length   753 a.a.
NCBI ID   WP_250315191.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 1325741..1338002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS06845 (M9H69_06845) - 1326524..1327297 (-) 774 WP_250315188.1 HAD hydrolase family protein -
  M9H69_RS06850 (M9H69_06850) - 1327302..1328159 (-) 858 WP_250315189.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  M9H69_RS06855 (M9H69_06855) - 1328308..1328629 (-) 322 Protein_1305 TfoX/Sxy family protein -
  M9H69_RS06860 (M9H69_06860) - 1328663..1329397 (-) 735 WP_000140925.1 amino acid ABC transporter ATP-binding protein -
  M9H69_RS06865 (M9H69_06865) - 1329397..1330080 (-) 684 WP_250315190.1 amino acid ABC transporter permease -
  M9H69_RS06870 (M9H69_06870) - 1330272..1330502 (+) 231 WP_000443577.1 DUF1797 family protein -
  M9H69_RS06875 (M9H69_06875) clpE 1330741..1333002 (+) 2262 WP_250315191.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  M9H69_RS06880 (M9H69_06880) - 1333134..1333586 (+) 453 WP_250315192.1 NUDIX hydrolase -
  M9H69_RS06885 (M9H69_06885) - 1333645..1333944 (+) 300 WP_250315193.1 DUF1827 family protein -
  M9H69_RS06890 (M9H69_06890) metK 1334017..1335207 (-) 1191 WP_000003926.1 methionine adenosyltransferase -
  M9H69_RS06895 (M9H69_06895) - 1335388..1336731 (-) 1344 WP_002875957.1 DEAD/DEAH box helicase -
  M9H69_RS06900 (M9H69_06900) - 1336863..1337678 (-) 816 WP_084851587.1 endonuclease/exonuclease/phosphatase family protein -

Sequence


Protein


Download         Length: 753 a.a.        Molecular weight: 84089.52 Da        Isoelectric Point: 5.1787

>NTDB_id=692936 M9H69_RS06875 WP_250315191.1 1330741..1333002(+) (clpE) [Streptococcus oralis strain HP01]
MLCQNCKINDSTIHLYTNINGQQKQIDLCQNCYKIIKTDPNNTLFKGMTDLNNRDFDPFGDFFNDLNNFRASSNNVPPTQ
SGGGYGGNGGYGPQNRGPVQTPPPSQERGLLEEYGINVTEIARRGDIDPVIGRDEEIIRVIEILNRRTKNNPVLIGEPGV
GKTAVVEGLAQKIVDGDVPHKLQGKQVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRKREDIILFIDEIHEIVGAGSAGD
GNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPTVEETIIILKGVQKKYEDYHHVMYTDAAIE
AAANLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKVIDQRLIEAENLKAQATREEDFEKAAYFRDQIAKYKEMQK
NKVTDQDTPIISEKTIEHIIEQKTNIPVGELKEKEQSQLIHLADDLKAHVIGQDEAVDKIAKAIRRNRVGLGTPNRPIGS
FLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHSVAKLVGAPPGYVGYDEAGQLTEKVRRNPYSLILLDEVE
KAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDAIIIMTSNAGTGKAEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDG
IIEFKPLSKDNLLQIVELMLADVNKRLSSNNIHLDVTDKVKEKLVDLGYDPKMGARPLRRTIQDHIEDAITDYYLENPSE
KDLKAVMTSNGKIQIKSAKKTEKIKENTSEREE

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=692936 M9H69_RS06875 WP_250315191.1 1330741..1333002(+) (clpE) [Streptococcus oralis strain HP01]
ATGCTCTGTCAAAACTGTAAAATTAACGACTCAACAATTCATCTGTATACCAATATCAATGGGCAGCAAAAGCAAATTGA
TCTCTGTCAAAATTGCTATAAAATTATCAAAACAGATCCAAATAATACCCTCTTTAAAGGAATGACTGACTTAAACAATC
GTGACTTTGATCCTTTCGGAGACTTTTTCAATGATTTGAACAATTTCAGGGCTTCTTCAAATAACGTCCCTCCAACTCAA
TCCGGTGGGGGATACGGAGGCAATGGGGGATACGGACCTCAAAACCGCGGACCTGTTCAAACACCTCCTCCTAGCCAAGA
AAGAGGGCTCCTAGAGGAATATGGTATCAACGTGACTGAAATAGCTCGTCGAGGAGATATTGACCCTGTTATCGGCCGAG
ACGAGGAGATTATCCGCGTTATCGAAATCCTCAACCGTCGAACCAAAAACAATCCTGTCCTTATCGGAGAACCAGGTGTT
GGTAAAACAGCCGTCGTTGAAGGTCTAGCTCAGAAGATTGTTGATGGTGATGTTCCCCATAAACTCCAAGGCAAGCAGGT
CATCCGTCTGGATGTGGTTAGTCTAGTTCAAGGAACAGGGATTCGAGGCCAATTTGAAGAACGCATGCAAAAGCTCATGG
AAGAAATTCGCAAACGCGAGGACATCATCCTCTTTATCGACGAAATTCATGAAATTGTTGGTGCAGGGTCAGCAGGTGAT
GGCAATATGGATGCAGGCAATATCCTGAAACCAGCCCTTGCCCGTGGTGAATTGCAATTGGTTGGCGCTACTACTCTCAA
TGAATACCGTATCATTGAAAAAGATGCTGCTTTGGAACGTCGTATGCAGCCTGTCAAAGTTGATGAACCAACTGTCGAAG
AAACCATTATCATCCTCAAAGGGGTTCAAAAGAAATACGAAGACTACCATCACGTCATGTACACAGACGCTGCTATCGAA
GCTGCTGCAAATCTTTCCAATCGCTATATCCAAGACCGCTTCTTGCCAGACAAGGCTATTGACCTGTTAGATGAAGCTGG
TTCTAAGATGAATCTGACGCTGAACTTTGTTGATCCTAAAGTGATTGATCAGCGTTTAATTGAAGCTGAGAATCTCAAGG
CTCAAGCTACTCGAGAGGAAGACTTTGAAAAGGCTGCCTATTTCCGCGATCAGATTGCCAAGTACAAGGAAATGCAGAAA
AACAAGGTGACTGACCAGGATACTCCTATCATTAGCGAGAAAACCATTGAGCATATCATTGAGCAGAAAACCAATATTCC
TGTCGGAGAACTCAAAGAAAAAGAACAGTCTCAGCTTATCCATCTAGCAGACGACCTCAAAGCTCATGTCATTGGTCAAG
ATGAAGCTGTCGATAAGATTGCCAAAGCCATCCGTCGTAATCGTGTTGGTCTTGGAACTCCTAACCGCCCAATCGGAAGC
TTCCTCTTTGTCGGACCAACTGGTGTCGGTAAGACAGAACTGTCCAAACAACTAGCCATTGAACTCTTTGGTTCTGCTGA
CAGCATGATTCGCTTTGATATGAGTGAATACATGGAAAAACACAGTGTGGCTAAATTGGTCGGAGCCCCTCCAGGTTATG
TTGGCTACGATGAAGCGGGTCAGTTAACGGAAAAAGTTCGTCGTAATCCTTACTCACTCATCCTTCTCGATGAAGTCGAA
AAAGCCCATCCAGATGTGATGCACATGTTCCTTCAAGTCTTAGACGATGGCCGTTTGACAGACGGACAAGGACGAACAGT
TAGCTTTAAGGATGCTATCATTATCATGACCTCAAATGCCGGTACCGGTAAGGCCGAAGCCAGTGTTGGTTTTGGAGCTG
CTCGTGAAGGTCGAACCAACTCTGTTCTCGGTGAACTCGGCAACTTCTTTAGTCCTGAGTTTATGAACCGTTTTGACGGC
ATCATCGAATTTAAACCTCTCAGCAAGGACAACCTTCTCCAAATCGTCGAACTCATGCTAGCGGATGTCAACAAACGCCT
CTCTAGCAACAACATCCACCTCGATGTGACTGACAAGGTCAAGGAAAAGTTGGTTGACTTGGGATATGATCCCAAAATGG
GGGCACGGCCACTCCGTCGTACCATTCAAGACCATATTGAGGATGCTATCACAGACTACTACCTTGAAAACCCAAGTGAA
AAAGACCTCAAGGCAGTTATGACAAGCAATGGTAAGATTCAAATCAAATCTGCCAAAAAAACTGAAAAAATCAAAGAAAA
TACTTCTGAAAGAGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

94.29

100

0.943

  clpE Streptococcus pneumoniae D39

94.29

100

0.943

  clpE Streptococcus pneumoniae R6

94.29

100

0.943

  clpE Streptococcus pneumoniae TIGR4

94.157

100

0.942

  clpE Streptococcus mutans UA159

83.444

100

0.837

  clpC Lactococcus lactis subsp. cremoris KW2

75.794

100

0.761

  clpC Bacillus subtilis subsp. subtilis str. 168

52.615

86.321

0.454

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.393

86.587

0.41

  clpC Streptococcus thermophilus LMD-9

47.115

82.869

0.39

  clpC Streptococcus pneumoniae TIGR4

47.182

82.47

0.389

  clpC Streptococcus pneumoniae Rx1

47.182

82.47

0.389

  clpC Streptococcus pneumoniae D39

47.182

82.47

0.389

  clpC Streptococcus mutans UA159

46.571

83.267

0.388

  clpC Streptococcus thermophilus LMG 18311

46.87

82.736

0.388