Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   EP180_RS02745 Genome accession   NZ_AP018385
Coordinates   449381..449992 (+) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FC498     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444381..454992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP180_RS02715 (NgFC498_00452) - 444811..445392 (-) 582 WP_047923823.1 superoxide dismutase -
  EP180_RS02725 (NgFC498_00453) dnaB 445556..446962 (+) 1407 WP_047917169.1 replicative DNA helicase -
  EP180_RS02730 (NgFC498_00454) pilH 447117..447782 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EP180_RS02735 (NgFC498_00455) pilV 447814..448425 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  EP180_RS02740 (NgFC498_00456) pilJ 448422..449402 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  EP180_RS02745 (NgFC498_00457) pilK 449381..449992 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EP180_RS02750 (NgFC498_00458) pilL 449994..450467 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  EP180_RS02755 (NgFC498_00459) - 450537..450845 (-) 309 WP_010951048.1 AzlD family protein -
  EP180_RS13545 - 450842..451549 (-) 708 Protein_462 AzlC family ABC transporter permease -
  EP180_RS02765 (NgFC498_00461) dut 451715..452167 (+) 453 WP_103195211.1 dUTP diphosphatase -
  EP180_RS02770 (NgFC498_00462) dapC 452245..453432 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  EP180_RS02775 (NgFC498_00463) yaaA 453743..454522 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=69261 EP180_RS02745 WP_003687918.1 449381..449992(+) (pilK) [Neisseria gonorrhoeae strain FC498]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=69261 EP180_RS02745 WP_003687918.1 449381..449992(+) (pilK) [Neisseria gonorrhoeae strain FC498]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment