Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   M9414_RS07000 Genome accession   NZ_CP097795
Coordinates   1504268..1506661 (-) Length   797 a.a.
NCBI ID   WP_250269193.1    Uniprot ID   -
Organism   Pasteurella multocida strain 34030     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1499268..1511661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9414_RS06980 (M9414_06980) kdsB 1500486..1501262 (-) 777 WP_250262806.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M9414_RS06985 (M9414_06985) - 1501264..1501446 (-) 183 WP_076090529.1 Trm112 family protein -
  M9414_RS06990 (M9414_06990) lpxK 1501458..1502435 (-) 978 WP_083002776.1 tetraacyldisaccharide 4'-kinase -
  M9414_RS06995 (M9414_06995) msbA 1502467..1504215 (-) 1749 WP_250269192.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  M9414_RS07000 (M9414_07000) rec2 1504268..1506661 (-) 2394 WP_250269193.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M9414_RS07005 (M9414_07005) dksA 1506959..1507396 (+) 438 WP_010906892.1 RNA polymerase-binding protein DksA -
  M9414_RS07010 (M9414_07010) pcnB 1507484..1508989 (+) 1506 WP_104228071.1 polynucleotide adenylyltransferase PcnB -
  M9414_RS07015 (M9414_07015) folK 1509001..1509498 (+) 498 WP_010906894.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  M9414_RS07020 (M9414_07020) - 1509485..1510567 (-) 1083 WP_010906895.1 homoserine O-acetyltransferase -
  M9414_RS07025 (M9414_07025) - 1510730..1511440 (+) 711 WP_096743091.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 91056.44 Da        Isoelectric Point: 9.9028

>NTDB_id=692598 M9414_RS07000 WP_250269193.1 1504268..1506661(-) (rec2) [Pasteurella multocida strain 34030]
MKNALLSISVVTVLSACSLLWLPEHVLLHWHMTLLVFVLLLVSIIICVLCGKNHWISPLIFVLSSVGILGYIHDQARQTL
LQADLIAQLPRKIETEFKIIEVLQQKNYQTFVVSAQLIPQQAKQKMFLQWHAQEKAQIGEVWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLQETIKQTSTLDYQGLLIALAFGERAWLPTDIWQTYQKTSTAHVIAI
SGLHIGLAMGIGYFFIRFIQFVLPLKWVTPTLPIFVGLLFAWFYAELAGFTIPTTRAFFALAVVTLLRLWRRFYSVWQLL
LLVVALLLLANPLIVLSSSFWLSVSAVSALIIWYQIFPFSLLHWRGKSLTEGPWRKCCWFFSLLHLQLGLLWLFTPVQLL
LFQGISLTSFMANVLVVPIYSVILVPLILFAVITQGAFSSWFLANTVAKQVTILLTPLQSHWVVFSQREILCLIAILALS
FIILIWYLYDFKKESLKCYIKVPRFFHLNQMRQLNPSLKWKIYSLATVISLYCFLQVLYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIALEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQHYGKTDRT
FCEAGKTWTWQHLTFKALSPTKTVKRAKNTDSCVLLISDGSYHILLTGDADIAAEKQFVKQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTTVYNTGELGQISLLFHAKHIEIQTARKDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=692598 M9414_RS07000 WP_250269193.1 1504268..1506661(-) (rec2) [Pasteurella multocida strain 34030]
ATGAAAAACGCTCTTTTGTCAATATCTGTTGTGACTGTATTAAGTGCATGTTCGTTACTTTGGCTACCTGAACATGTCTT
GCTCCATTGGCATATGACATTGTTAGTCTTCGTATTATTGCTTGTTAGCATAATCATTTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTTTGATCTTTGTACTGAGTTCAGTAGGCATTTTAGGCTATATCCACGATCAAGCTCGTCAGACATTA
TTGCAAGCTGACTTGATTGCTCAACTGCCTCGAAAGATAGAGACTGAATTTAAAATCATTGAAGTATTACAACAAAAAAA
CTATCAAACTTTTGTAGTTTCGGCACAATTGATACCGCAACAGGCAAAACAAAAAATGTTTCTTCAATGGCACGCGCAAG
AAAAAGCACAGATTGGCGAAGTTTGGAAAGGAGAGCTGCGGCTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCGACGGTAAAAAGTGCGGTCAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTACAAGAAACGATAAAACAGACCTCAACATTAGACTATCAAGGACTGTTAATCGCGTTGG
CTTTTGGTGAACGGGCATGGTTACCCACAGATATTTGGCAAACTTATCAAAAAACTAGCACAGCACATGTGATTGCCATA
TCGGGTTTACATATTGGACTTGCGATGGGAATAGGTTATTTTTTTATCCGTTTCATTCAGTTTGTGTTGCCATTAAAGTG
GGTGACACCAACCTTACCAATATTCGTAGGGCTTCTTTTTGCCTGGTTTTATGCGGAGCTAGCGGGTTTTACTATACCGA
CGACAAGAGCATTTTTCGCTCTCGCCGTTGTCACTTTGCTACGACTCTGGCGGCGATTTTATAGTGTTTGGCAACTTCTT
TTATTGGTAGTTGCTTTGTTATTGTTAGCAAATCCCTTAATTGTTTTATCCAGTAGCTTTTGGCTGTCAGTGAGCGCAGT
CAGTGCTCTGATTATTTGGTACCAAATATTCCCCTTCTCGTTATTACACTGGCGAGGAAAAAGTCTTACAGAGGGTCCTT
GGCGCAAATGTTGTTGGTTCTTTAGTCTTCTTCATTTACAACTTGGCTTATTATGGCTTTTTACCCCTGTTCAATTATTG
CTTTTTCAGGGAATATCTTTAACAAGCTTTATGGCGAATGTGCTTGTCGTCCCTATTTATAGTGTGATTTTAGTACCATT
GATTTTATTTGCGGTGATCACACAAGGGGCTTTTTCCTCTTGGTTTCTCGCAAATACTGTCGCGAAACAGGTCACGATAC
TTTTAACGCCATTACAATCCCATTGGGTTGTCTTCTCACAGCGGGAAATACTCTGTCTGATCGCGATCTTAGCTTTAAGC
TTTATTATATTGATTTGGTATCTGTATGATTTTAAAAAAGAATCACTTAAGTGCTATATCAAAGTGCCGCGTTTTTTTCA
TCTTAATCAAATGCGGCAGTTAAATCCGTCTTTAAAATGGAAAATTTATTCCCTTGCTACAGTCATCAGTCTTTATTGTT
TTTTACAGGTACTTTATAAGGAGATATCTCAACCCCTTTGGCGTTTAGATACGCTCGATGTGGGGCAGGGGTTAGCTAAC
CTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCATCTTGGGCGGGAGGAAGTATGGCAGAACTAGAAAT
CATCCCTTATTTACAAAGAGAGGGGATTGCGTTAGAACAGGTGATTTTAAGTCATGATGATAATGATCATGTTGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACAGCGTCTGCTCAACATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGCAAAACTTGGACTTGGCAACACTTAACATTCAAAGCCCTTTCACCGACTAAAACAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTTATCATATCCTTTTAACGGGCGATGCAGATATTGCTG
CGGAAAAGCAGTTCGTGAAGCAGCTAAGTCAACTTGATGTATTACAAGTTGGACATCATGGCAGTAAAACCTCAACTGGA
TATGAACTGCTTTATCAAACACGACCAAAAATCGCGCTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGACAGTATATAACACTGGCGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCAAAACACATCGAAATTCAAACCGCAAGAAAGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-487)

Domain of unknown function (DUF4131) (DUF4131)

(32-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.003

100

0.511