Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   M9417_RS08130 Genome accession   NZ_CP097793
Coordinates   1649953..1652346 (+) Length   797 a.a.
NCBI ID   WP_170356759.1    Uniprot ID   -
Organism   Pasteurella multocida strain 21275     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1644953..1657346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9417_RS08105 (M9417_08105) - 1645174..1645884 (-) 711 WP_005722678.1 vancomycin high temperature exclusion protein -
  M9417_RS08110 (M9417_08110) - 1646047..1647129 (+) 1083 WP_005716866.1 homoserine O-acetyltransferase -
  M9417_RS08115 (M9417_08115) folK 1647116..1647613 (-) 498 WP_014391244.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  M9417_RS08120 (M9417_08120) pcnB 1647625..1649130 (-) 1506 WP_079157953.1 polynucleotide adenylyltransferase PcnB -
  M9417_RS08125 (M9417_08125) dksA 1649219..1649656 (-) 438 WP_005716860.1 RNA polymerase-binding protein DksA -
  M9417_RS08130 (M9417_08130) rec2 1649953..1652346 (+) 2394 WP_170356759.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M9417_RS08135 (M9417_08135) msbA 1652399..1654147 (+) 1749 WP_014391241.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  M9417_RS08140 (M9417_08140) lpxK 1654179..1655156 (+) 978 WP_014391240.1 tetraacyldisaccharide 4'-kinase -
  M9417_RS08145 (M9417_08145) - 1655168..1655350 (+) 183 WP_005716837.1 Trm112 family protein -
  M9417_RS08150 (M9417_08150) kdsB 1655352..1656128 (+) 777 WP_005756949.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 91019.42 Da        Isoelectric Point: 9.7827

>NTDB_id=692562 M9417_RS08130 WP_170356759.1 1649953..1652346(+) (rec2) [Pasteurella multocida strain 21275]
MKNALLSMSAVTVFSACSLLWLPEHFLLHWHITLLVFALLLVSIIICVLCGKNHWISPLIFVMSSVGILGYIHDQARQTL
LQADLVVQLPRKIETEFKIIEVLQQKNYQTFVVSAQLSPQQAKQKMILQWHAQEKAQIGEIWKGELQIRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLREGVKQTMQLEYQGLLLALAFGERAWLPTDIWQTYQKTNTAHVIAI
SGLHIGLAMGIGYFFIRLIQFLLPLKWVTPTLPIIVGLLLAWFYAELAGFSIPTSRAFFALTVVSWVKLWRRSYSVWQFF
LLVVALLLLGEPCMILSSSFWLSVGAVSVLMLWYQIFPLSLLHWRGKKITERPWRNCRWFFSLLHLQLGLLWLFTPVQLL
LFQGIALTSFMANVLVVPIYSVILIPLILLAVITQGAFSSWSIANTVAKYVTMLLTPLQSHWVVFSQQEILCLIAILALT
FIILIWYLYDLKKESLKCYAKVPRFFHLNQMRLLNPSLKWKTYLLAVVISPYCFLQILYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIVPYLQREGIELEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQNYGKTDRT
FCEAGKTWTWQLLTFKALSPTKIVKRAKNTDSCVLLISDGSHHILLTGDADIAAEKQFVNQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTAVYNTGELGQISLLFHAKHIEIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=692562 M9417_RS08130 WP_170356759.1 1649953..1652346(+) (rec2) [Pasteurella multocida strain 21275]
ATGAAAAACGCTCTTTTGTCAATGTCTGCCGTGACCGTATTCAGCGCCTGTTCGTTACTTTGGCTACCTGAACATTTCTT
GCTTCATTGGCACATAACATTGTTAGTCTTCGCATTATTGCTAGTCAGCATAATCATTTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTCTGATCTTTGTAATGAGTTCAGTAGGTATTTTAGGCTATATTCACGATCAAGCTCGTCAGACATTA
TTGCAAGCGGACTTGGTTGTTCAACTGCCTCGAAAGATAGAGACAGAATTTAAAATCATTGAAGTACTACAACAAAAAAA
CTATCAAACTTTTGTGGTTTCAGCACAATTATCTCCGCAACAAGCAAAACAAAAAATGATTCTTCAATGGCACGCGCAAG
AAAAGGCACAGATAGGGGAGATTTGGAAAGGAGAGCTACAGATCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTTGCCAAAGGCATTACCGCTTATGCAACGGTAAAAAGTGCGGTCAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTGCGAGAGGGAGTGAAACAGACCATGCAGCTGGAATATCAAGGGCTGTTACTTGCGCTGG
CTTTTGGTGAACGGGCATGGTTACCCACAGACATTTGGCAAACTTATCAAAAAACTAACACAGCACATGTGATTGCGATA
TCGGGTTTACATATTGGGCTTGCGATGGGAATAGGTTATTTCTTTATTCGTTTAATTCAGTTCCTATTGCCATTAAAGTG
GGTGACACCGACCTTGCCAATCATTGTTGGGCTTCTTTTGGCATGGTTTTATGCTGAGTTGGCGGGCTTTAGTATTCCAA
CATCACGCGCGTTTTTTGCTTTAACTGTCGTGTCGTGGGTAAAACTTTGGCGGCGTTCTTATTCTGTTTGGCAATTTTTT
TTATTAGTTGTTGCTTTGTTATTGCTAGGTGAACCATGCATGATTTTATCGAGCAGTTTCTGGCTGTCGGTTGGTGCTGT
GAGTGTATTAATGCTTTGGTATCAAATTTTTCCGCTGTCTTTATTACATTGGCGAGGAAAAAAGATCACAGAGCGTCCTT
GGCGCAACTGTCGTTGGTTCTTTAGTCTTCTTCATTTACAACTTGGCTTATTGTGGCTTTTTACTCCCGTTCAATTATTG
CTTTTTCAGGGAATAGCTTTAACGAGCTTTATGGCGAATGTGCTTGTGGTGCCTATTTATAGTGTGATTTTAATACCATT
GATTTTATTGGCAGTGATCACTCAAGGGGCATTTTCCTCTTGGTCTATTGCAAATACTGTTGCGAAATATGTCACGATGC
TTTTAACTCCATTACAATCTCATTGGGTTGTATTCTCACAGCAGGAAATACTCTGCCTGATCGCGATCTTAGCTTTAACT
TTTATTATATTGATTTGGTATCTCTATGATTTAAAAAAAGAATCACTGAAGTGCTACGCTAAAGTACCACGTTTTTTTCA
TCTTAATCAAATGCGGCTGTTAAATCCGTCTTTAAAATGGAAAACTTATTTACTCGCTGTTGTCATCAGTCCTTACTGTT
TCTTACAGATACTTTATAAGGAGATATCTCAACCGCTTTGGCGTTTAGATACGCTCGATGTTGGACAAGGGTTAGCTAAC
TTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCGTCTTGGGCGGGAGGAAGTATGGCGGAACTGGAAAT
TGTACCCTATTTACAAAGAGAGGGGATTGAGTTAGAACAGGTGATTTTAAGCCATGATGATAATGATCATGTTGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACGGCGTCTGCTCAAAATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGTAAAACCTGGACTTGGCAACTCTTAACATTCAAAGCCCTTTCACCGACTAAAATAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTCATCATATCCTCTTAACTGGTGATGCAGATATTGCTG
CGGAAAAGCAGTTTGTGAATCAGTTAAGTCAACTTGATGTGTTACAAGTTGGACATCATGGCAGTAAAACGTCAACAGGG
TATGAACTTCTTTATCAAACACGACCAAAAATCGCATTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGGCTGTATATAACACTGGTGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCTAAACACATCGAGATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-487)

Domain of unknown function (DUF4131) (DUF4131)

(30-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.105

96.487

0.493