Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   M9412_RS02080 Genome accession   NZ_CP097789
Coordinates   471794..474187 (-) Length   797 a.a.
NCBI ID   WP_250262807.1    Uniprot ID   -
Organism   Pasteurella multocida strain 35564     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 466794..479187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9412_RS02060 (M9412_02060) kdsB 468013..468789 (-) 777 WP_250262806.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M9412_RS02065 (M9412_02065) - 468791..468973 (-) 183 WP_076090529.1 Trm112 family protein -
  M9412_RS02070 (M9412_02070) lpxK 468985..469962 (-) 978 WP_083002776.1 tetraacyldisaccharide 4'-kinase -
  M9412_RS02075 (M9412_02075) msbA 469993..471741 (-) 1749 WP_005716843.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  M9412_RS02080 (M9412_02080) rec2 471794..474187 (-) 2394 WP_250262807.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M9412_RS02085 (M9412_02085) dksA 474485..474922 (+) 438 WP_010906892.1 RNA polymerase-binding protein DksA -
  M9412_RS02090 (M9412_02090) pcnB 475010..476515 (+) 1506 WP_250263110.1 polynucleotide adenylyltransferase PcnB -
  M9412_RS02095 (M9412_02095) folK 476527..477024 (+) 498 WP_104884493.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  M9412_RS02100 (M9412_02100) - 477011..478093 (-) 1083 WP_250262808.1 homoserine O-acetyltransferase -
  M9412_RS02105 (M9412_02105) - 478256..478966 (+) 711 WP_250262809.1 ElyC/SanA/YdcF family protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 91174.50 Da        Isoelectric Point: 9.9072

>NTDB_id=692454 M9412_RS02080 WP_250262807.1 471794..474187(-) (rec2) [Pasteurella multocida strain 35564]
MKNALLSISVVTVFSACSLLWLPEHVLLHWHMTLLVFALLLVSIIICVLCGKNHWISPLIFVLSSVGILGYIHDQARQTL
LQADLIAQLPRKIETEFKIIEVLQQKNYQTFVVSAQLIPQQAKQKMFLQWHAQEKAQIGEVWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLQETIKQTSTLDYQGLLIALAFGERAWLPTDIWQTYQKTNTAHVIAI
SGLHIGLAMGIGYFFIRFIQFVLPLKWVTPTLPIFVGLLFAWFYAELAGFTIPTTRAFFALAVVTLLRFWRRFYSVWQLL
LLVVALLLLANPLIVLSSSFWLSVSAVSALIIWYQIFPFSLLHWRGKSLTEGPWRKCCWFFSLLHLQLGLLWLFTPVQLL
LFQGISLTSFMANVLVVPIYSVILVPLILFAVITQGAFSSWFLANTVAKQVTILLTPLQSHWVVFSQREILCLIAILALS
FIILIWYLYDFKKESLKCYIKVPRFFHLHQMRQLNPSLKWKIYSLATVISLYCFLQVLYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIALEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQHYGKTDRT
FCEAGKTWTWQHLTFKALSPTKTVKRAKNRDSCVLLISDGSYHILLTGDADIAAEKQFVKQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTTVYNTGELGQISLLFHAKHIEIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=692454 M9412_RS02080 WP_250262807.1 471794..474187(-) (rec2) [Pasteurella multocida strain 35564]
ATGAAAAACGCTCTTTTGTCAATATCTGTTGTGACTGTATTCAGTGCCTGTTCGTTACTTTGGCTGCCTGAACATGTCTT
GCTCCATTGGCATATGACATTGTTAGTCTTCGCATTATTGCTTGTTAGCATAATCATTTGTGTTCTTTGTGGAAAAAATC
ACTGGATTTCACCTCTGATCTTTGTACTGAGTTCGGTAGGCATTTTAGGCTATATCCACGATCAAGCTCGTCAGACATTA
TTGCAAGCGGACTTGATTGCTCAACTGCCTCGAAAGATAGAGACAGAATTTAAAATCATTGAAGTATTACAACAAAAAAA
CTATCAAACTTTTGTAGTTTCGGCACAATTGATACCGCAACAGGCAAAACAAAAAATGTTTCTTCAATGGCACGCGCAAG
AAAAAGCACAGATTGGCGAAGTTTGGAAAGGAGAATTACGACTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCGACGGTAAAAAGTGCGGTTAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTACAAGAAACGATAAAACAGACTTCAACATTAGATTATCAAGGACTGCTAATCGCGTTGG
CTTTTGGTGAACGGGCATGGTTACCCACAGATATTTGGCAAACTTATCAAAAAACTAACACCGCACATGTGATTGCCATA
TCGGGTTTACATATTGGACTTGCGATGGGAATAGGTTATTTTTTTATCCGTTTCATTCAGTTTGTGTTGCCATTAAAGTG
GGTGACACCAACCTTACCAATATTCGTAGGGCTTCTTTTTGCCTGGTTTTATGCGGAGCTAGCGGGTTTTACTATACCGA
CGACAAGAGCATTTTTCGCTCTCGCTGTTGTCACTTTGCTACGATTCTGGCGGCGATTTTATAGTGTTTGGCAACTTCTT
TTATTGGTAGTTGCTTTGTTATTGTTAGCAAATCCCTTAATTGTTTTATCCAGTAGCTTTTGGCTGTCAGTGAGCGCAGT
CAGTGCTCTGATTATTTGGTACCAAATATTCCCCTTCTCGTTATTACACTGGCGAGGAAAAAGTCTTACAGAGGGTCCTT
GGCGAAAATGTTGTTGGTTCTTTAGTCTTCTTCATTTACAACTTGGCTTATTATGGCTTTTTACCCCTGTTCAATTATTG
CTTTTTCAGGGAATATCTTTAACGAGCTTTATGGCGAATGTGCTTGTCGTCCCTATTTATAGTGTGATTTTAGTACCATT
GATTTTATTTGCGGTGATCACACAAGGGGCTTTTTCCTCTTGGTTTCTCGCAAATACTGTCGCGAAACAGGTCACGATAC
TTTTAACGCCATTACAATCCCATTGGGTTGTCTTCTCACAGCGGGAAATACTCTGTCTGATCGCGATCTTAGCTTTAAGC
TTTATTATATTGATTTGGTATCTGTATGATTTTAAAAAAGAATCACTTAAGTGCTATATCAAAGTGCCGCGTTTTTTTCA
TCTTCATCAAATGCGACAGTTAAATCCGTCTTTAAAATGGAAAATTTATTCCCTTGCTACAGTCATCAGTCTTTATTGTT
TTTTACAGGTACTTTATAAGGAGATATCTCAACCCCTTTGGCGTTTAGATACGCTCGATGTGGGGCAGGGGTTAGCTAAC
CTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCATCTTGGGCGGGAGGAAGTATGGCAGAACTAGAAAT
CATCCCTTATTTACAAAGAGAGGGGATTGCGTTAGAACAGGTGATTTTAAGTCATGATGATAATGATCATGTTGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACAGCGTCTGCTCAACATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGCAAAACTTGGACTTGGCAACACTTAACATTCAAAGCCCTTTCACCGACTAAAACAGTGAAGCGAGC
GAAAAATAGGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTTATCATATCCTTTTAACGGGCGATGCAGATATTGCTG
CGGAAAAGCAGTTCGTGAAGCAGTTAAGTCAACTTGATGTATTACAAGTTGGACATCATGGCAGTAAAACCTCAACTGGA
TATGAACTGCTTTATCAAACACGACCAAAAATCGCGCTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGACAGTATATAACACTGGCGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCAAAACACATCGAAATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-487)

Domain of unknown function (DUF4131) (DUF4131)

(31-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.003

100

0.511