Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MF621_RS19140 Genome accession   NZ_CP097779
Coordinates   3849525..3849815 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain R 4.6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3844525..3854815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF621_RS19100 (MF621_003801) darA 3844542..3844871 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  MF621_RS19105 (MF621_003802) - 3844884..3845324 (+) 441 WP_004264730.1 YaaR family protein -
  MF621_RS19110 (MF621_003803) holB 3845336..3846325 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  MF621_RS19115 (MF621_003804) ricT 3846328..3847155 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  MF621_RS19120 (MF621_003805) yabA 3847170..3847529 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  MF621_RS19125 (MF621_003806) - 3847590..3848333 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MF621_RS19130 (MF621_003807) - 3848320..3848619 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  MF621_RS19135 (MF621_003808) rsmI 3848594..3849475 (+) 882 WP_025854083.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MF621_RS19140 (MF621_003809) abrB 3849525..3849815 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  MF621_RS19145 (MF621_003810) metG 3850298..3852289 (+) 1992 WP_025854082.1 methionine--tRNA ligase -
  MF621_RS19150 (MF621_003811) - 3852365..3853132 (+) 768 WP_025854081.1 TatD family hydrolase -
  MF621_RS19155 (MF621_003812) - 3853267..3854592 (+) 1326 WP_095324173.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=692328 MF621_RS19140 WP_169510469.1 3849525..3849815(-) (abrB) [Bacillus velezensis strain R 4.6]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=692328 MF621_RS19140 WP_169510469.1 3849525..3849815(-) (abrB) [Bacillus velezensis strain R 4.6]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGTAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979