Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MF621_RS16220 Genome accession   NZ_CP097779
Coordinates   3281936..3282625 (-) Length   229 a.a.
NCBI ID   WP_196769287.1    Uniprot ID   -
Organism   Bacillus velezensis strain R 4.6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3276936..3287625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF621_RS16185 (MF621_003222) fliW 3277027..3277458 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  MF621_RS16190 (MF621_003223) - 3277488..3278057 (-) 570 WP_007407476.1 DUF6470 family protein -
  MF621_RS16195 (MF621_003224) flgL 3278148..3279065 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  MF621_RS16200 (MF621_003225) flgK 3279077..3280594 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  MF621_RS16205 (MF621_003226) - 3280610..3281092 (-) 483 WP_003151394.1 flagellar protein FlgN -
  MF621_RS16210 (MF621_003227) flgM 3281107..3281373 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  MF621_RS16215 (MF621_003228) - 3281443..3281862 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  MF621_RS16220 (MF621_003229) comFC 3281936..3282625 (-) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  MF621_RS16225 (MF621_003230) - 3282631..3282915 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  MF621_RS16230 (MF621_003231) comFA 3282973..3284358 (-) 1386 WP_025853539.1 DEAD/DEAH box helicase Machinery gene
  MF621_RS16235 (MF621_003232) - 3284466..3285314 (-) 849 WP_032857563.1 DegV family protein -
  MF621_RS16240 (MF621_003233) degU 3285412..3286101 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MF621_RS16245 (MF621_003234) degS 3286178..3287341 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25265.91 Da        Isoelectric Point: 8.4880

>NTDB_id=692315 MF621_RS16220 WP_196769287.1 3281936..3282625(-) (comFC) [Bacillus velezensis strain R 4.6]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGSVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKSAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=692315 MF621_RS16220 WP_196769287.1 3281936..3282625(-) (comFC) [Bacillus velezensis strain R 4.6]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCTCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAATCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(143-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603