Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   MF621_RS11400 Genome accession   NZ_CP097779
Coordinates   2357020..2358057 (-) Length   345 a.a.
NCBI ID   WP_024085602.1    Uniprot ID   -
Organism   Bacillus velezensis strain R 4.6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2352020..2363057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF621_RS11350 (MF621_002261) tasA 2352255..2353040 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  MF621_RS11355 (MF621_002262) sipW 2353104..2353688 (-) 585 WP_025852917.1 signal peptidase I SipW -
  MF621_RS11360 (MF621_002263) tapA 2353660..2354331 (-) 672 WP_025852919.1 amyloid fiber anchoring/assembly protein TapA -
  MF621_RS11365 (MF621_002264) - 2354590..2354919 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  MF621_RS11370 (MF621_002265) - 2354959..2355138 (-) 180 WP_003153093.1 YqzE family protein -
  MF621_RS11375 (MF621_002266) comGG 2355195..2355572 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  MF621_RS11380 (MF621_002267) comGF 2355573..2356073 (-) 501 WP_226565836.1 competence type IV pilus minor pilin ComGF -
  MF621_RS11385 (MF621_002268) comGE 2355982..2356296 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  MF621_RS11390 (MF621_002269) comGD 2356280..2356717 (-) 438 WP_025852922.1 competence type IV pilus minor pilin ComGD Machinery gene
  MF621_RS11395 (MF621_002270) comGC 2356707..2356973 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  MF621_RS11400 (MF621_002271) comGB 2357020..2358057 (-) 1038 WP_024085602.1 competence type IV pilus assembly protein ComGB Machinery gene
  MF621_RS11405 (MF621_002272) comGA 2358044..2359114 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  MF621_RS11410 (MF621_002273) - 2359306..2360256 (-) 951 WP_003153082.1 magnesium transporter CorA family protein -
  MF621_RS11415 (MF621_002274) - 2360402..2361703 (+) 1302 WP_014305416.1 hemolysin family protein -
  MF621_RS11420 (MF621_002275) - 2361741..2362571 (-) 831 WP_032856863.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39618.91 Da        Isoelectric Point: 9.5658

>NTDB_id=692294 MF621_RS11400 WP_024085602.1 2357020..2358057(-) (comGB) [Bacillus velezensis strain R 4.6]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYEVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPYYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=692294 MF621_RS11400 WP_024085602.1 2357020..2358057(-) (comGB) [Bacillus velezensis strain R 4.6]
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGTGATGCGTTTTACGAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCAGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTCATTGTTGTGAAAATACCCCTCTTGGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTATTATGAAAAAGATCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(16-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

65.635

93.623

0.614