Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MF621_RS06325 Genome accession   NZ_CP097779
Coordinates   1217305..1217589 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain R 4.6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1212305..1222589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF621_RS06305 (MF621_001258) - 1213552..1214460 (+) 909 WP_025851471.1 ketopantoate reductase family protein -
  MF621_RS06310 (MF621_001259) - 1214490..1215722 (-) 1233 WP_025851469.1 aminopeptidase -
  MF621_RS06315 (MF621_001260) - 1215823..1215957 (-) 135 WP_003154559.1 protein YkpC -
  MF621_RS06320 (MF621_001261) mreBH 1216029..1217036 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  MF621_RS06325 (MF621_001262) abrB 1217305..1217589 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MF621_RS06330 (MF621_001263) - 1217762..1219066 (+) 1305 WP_014304932.1 ATP-binding protein -
  MF621_RS06335 (MF621_001264) - 1219068..1219895 (+) 828 WP_014304933.1 gamma-glutamylcyclotransferase -
  MF621_RS06340 (MF621_001265) ktrC 1219936..1220601 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  MF621_RS06345 (MF621_001266) ade 1220750..1222483 (+) 1734 WP_032856737.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=692279 MF621_RS06325 WP_024085249.1 1217305..1217589(+) (abrB) [Bacillus velezensis strain R 4.6]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=692279 MF621_RS06325 WP_024085249.1 1217305..1217589(+) (abrB) [Bacillus velezensis strain R 4.6]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543