Detailed information NTG0692257

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: MF621_RS01000
• Genome accession: NZ_CP097779
• Coordinates: 218669..219817 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain R 4.6
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 213669..224817

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MF621_RS00980 (MF621_000197)	-	214066..214749 (-)	684	WP_032857689.1	ABC transporter ATP-binding protein	-
MF621_RS00985 (MF621_000198)	-	214764..216200 (-)	1437	WP_095315717.1	ABC transporter permease	-
MF621_RS00990 (MF621_000199)	-	216413..217096 (+)	684	WP_024084885.1	response regulator transcription factor	-
MF621_RS00995 (MF621_000200)	-	217083..218516 (+)	1434	WP_161620115.1	HAMP domain-containing sensor histidine kinase	-
MF621_RS01000 (MF621_000201)	rapC	218669..219817 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
MF621_RS01005 (MF621_000202)	phrC	219801..219920 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
MF621_RS01010 (MF621_000203)	-	220071..220181 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
MF621_RS01015 (MF621_000204)	-	220261..221625 (-)	1365	WP_014304341.1	aspartate kinase	-
MF621_RS01020 (MF621_000205)	ceuB	222040..222993 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
MF621_RS01025 (MF621_000206)	-	222983..223930 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
MF621_RS01030 (MF621_000207)	-	223924..224682 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=692257 MF621_RS01000 WP_003156336.1 218669..219817(+) (rapC) [Bacillus velezensis strain R 4.6]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=692257 MF621_RS01000 WP_003156336.1 218669..219817(+) (rapC) [Bacillus velezensis strain R 4.6]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTCGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568