Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MF622_RS21765 Genome accession   NZ_CP097778
Coordinates   4833628..4834581 (-) Length   317 a.a.
NCBI ID   WP_250240408.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain K 1.14     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4828628..4839581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF622_RS21735 (MF622_004337) - 4828636..4828962 (-) 327 WP_025721930.1 thioredoxin family protein -
  MF622_RS21740 (MF622_004338) - 4829111..4830022 (-) 912 WP_250240404.1 aldo/keto reductase -
  MF622_RS21745 (MF622_004339) - 4830166..4830909 (-) 744 WP_250240405.1 alpha/beta hydrolase-fold protein -
  MF622_RS21750 (MF622_004340) - 4830943..4831923 (-) 981 WP_250240406.1 siderophore ABC transporter substrate-binding protein -
  MF622_RS21755 (MF622_004341) - 4831936..4832694 (-) 759 WP_029519266.1 ABC transporter ATP-binding protein -
  MF622_RS21760 (MF622_004342) - 4832688..4833638 (-) 951 WP_250240407.1 iron chelate uptake ABC transporter family permease subunit -
  MF622_RS21765 (MF622_004343) ceuB 4833628..4834581 (-) 954 WP_250240408.1 ABC transporter permease Machinery gene
  MF622_RS21770 (MF622_004344) - 4834906..4835583 (+) 678 WP_250245296.1 response regulator transcription factor -
  MF622_RS21775 (MF622_004345) - 4835580..4836497 (+) 918 WP_250240409.1 HAMP domain-containing sensor histidine kinase -
  MF622_RS21780 (MF622_004346) - 4836606..4837283 (+) 678 WP_023990360.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34746.75 Da        Isoelectric Point: 9.9012

>NTDB_id=692244 MF622_RS21765 WP_250240408.1 4833628..4834581(-) (ceuB) [Paenibacillus polymyxa strain K 1.14]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLAIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSVLFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=692244 MF622_RS21765 WP_250240408.1 4833628..4834581(-) (ceuB) [Paenibacillus polymyxa strain K 1.14]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTAGTACTGGCCTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGATTGATCATGCAGCAGCTTACCCGGAACCGATTTGTTTCTCCCACCACTGCA
GGGACGATGGATGCAGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGAGGAACACTGATTTTCATGAAGATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGCTTGATGTTTGGAGGTATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGTCGCTATGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCGCTGGCGTACATATATGCGAATCGTTTCACAATTGCAGGCATGGGCGAGGATTTTGCGGCGAATTTGGGAG
TTCATTATAAGCGCACCGTCAATGTTGGGTTGGCGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGCATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GACTTACGGTTGGTGTGATCGGGAGCGTGTTGTTCTTGTATTTGCTGTTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508