Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MF622_RS15925 Genome accession   NZ_CP097778
Coordinates   3593295..3593732 (-) Length   145 a.a.
NCBI ID   WP_250239449.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain K 1.14     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3588295..3598732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF622_RS15910 (MF622_003174) - 3589591..3591216 (-) 1626 WP_250239447.1 response regulator -
  MF622_RS15915 (MF622_003175) - 3591191..3593011 (-) 1821 WP_250239448.1 sensor histidine kinase -
  MF622_RS15920 (MF622_09900) - 3593126..3593302 (+) 177 WP_016822419.1 hypothetical protein -
  MF622_RS15925 (MF622_003177) nucA/comI 3593295..3593732 (-) 438 WP_250239449.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MF622_RS15930 (MF622_003178) - 3593873..3594067 (+) 195 WP_013310963.1 hypothetical protein -
  MF622_RS15935 (MF622_003179) - 3594455..3594757 (+) 303 WP_250239450.1 hypothetical protein -
  MF622_RS15940 (MF622_003180) - 3594826..3596712 (-) 1887 WP_250239452.1 Ig-like domain-containing protein -
  MF622_RS15945 (MF622_003181) - 3596833..3597255 (-) 423 WP_250239454.1 hypothetical protein -
  MF622_RS15950 (MF622_003182) - 3597272..3597940 (-) 669 WP_013310967.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15912.18 Da        Isoelectric Point: 9.7047

>NTDB_id=692237 MF622_RS15925 WP_250239449.1 3593295..3593732(-) (nucA/comI) [Paenibacillus polymyxa strain K 1.14]
MKKKLLSFIALVLLAAGAYWFEGGNLLTKMTGENLPSSAQVTLQFPSGRYPETAQHIKEAIQAGKSPVCTIDREGAEQNR
KHSLAGVPTRKGFDRDEWPMAMCSEGGKGANVKYIAPKDNRGAGSWVSHQLDQYDDGTRVKFVIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=692237 MF622_RS15925 WP_250239449.1 3593295..3593732(-) (nucA/comI) [Paenibacillus polymyxa strain K 1.14]
TTGAAGAAAAAATTGTTAAGTTTTATAGCTTTAGTGCTGCTGGCTGCGGGCGCGTACTGGTTTGAAGGAGGCAATCTTCT
TACGAAAATGACAGGAGAGAACCTGCCTTCATCGGCTCAGGTTACGCTGCAATTTCCGTCAGGTCGTTATCCTGAAACGG
CGCAGCATATTAAGGAAGCCATTCAAGCGGGAAAATCACCAGTATGCACAATTGACCGGGAAGGAGCCGAGCAAAATCGT
AAGCATTCACTTGCGGGTGTTCCTACTCGTAAAGGGTTTGATCGTGATGAATGGCCGATGGCTATGTGCTCAGAAGGGGG
CAAAGGTGCAAATGTCAAATACATAGCTCCTAAGGATAACCGTGGGGCAGGATCATGGGTCAGTCACCAGTTAGATCAGT
ACGATGATGGGACTCGTGTAAAATTCGTTATTAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.308

71.724

0.483