Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrQ   Type   Regulator
Locus tag   MF622_RS12405 Genome accession   NZ_CP097778
Coordinates   2778964..2780814 (+) Length   616 a.a.
NCBI ID   WP_250245091.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain K 1.14     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 2773964..2785814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF622_RS12380 (MF622_002469) - 2773979..2774621 (+) 643 Protein_2385 SDR family oxidoreductase -
  MF622_RS12385 (MF622_002470) - 2774809..2775831 (+) 1023 WP_250245088.1 NADH:flavin oxidoreductase/NADH oxidase -
  MF622_RS12390 (MF622_002471) - 2776008..2776259 (+) 252 Protein_2387 methyl-accepting chemotaxis protein -
  MF622_RS12395 (MF622_002472) - 2776723..2777133 (+) 411 WP_250245089.1 MarR family transcriptional regulator -
  MF622_RS12400 (MF622_002473) rcrP 2777208..2778971 (+) 1764 WP_250245090.1 ABC transporter ATP-binding protein Regulator
  MF622_RS12405 (MF622_002474) rcrQ 2778964..2780814 (+) 1851 WP_250245091.1 ABC transporter ATP-binding protein Regulator
  MF622_RS12410 (MF622_002475) - 2780935..2781243 (+) 309 WP_250245092.1 hypothetical protein -

Sequence


Protein


Download         Length: 616 a.a.        Molecular weight: 67878.39 Da        Isoelectric Point: 6.1579

>NTDB_id=692233 MF622_RS12405 WP_250245091.1 2778964..2780814(+) (rcrQ) [Paenibacillus polymyxa strain K 1.14]
MDKNEHTVDSQQMKMNQRGPMGKGPAGGSGAGEKANNFKKTISQLVSYSKAYVPMIILAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATLSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIVATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTTKLDTAKGDVEFKHVRFGYNSDRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAACRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=692233 MF622_RS12405 WP_250245091.1 2778964..2780814(+) (rcrQ) [Paenibacillus polymyxa strain K 1.14]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGCGAGGTCCCATGGGTAAAGGACCCGCGGG
GGGCAGTGGTGCTGGTGAAAAAGCGAATAATTTTAAAAAGACCATCAGCCAGCTTGTATCCTACAGCAAGGCCTATGTGC
CTATGATTATACTCGCTATGGTACTGGCCCTGGTTGGCTCTACCCTTAACGTGATTGGCCCAGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTACTGGCGCTTTT
ATATGGATTTGGTCTTATCTTTAACTATTTTCAGGGCTTTATTACAGCAACCCTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTATCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGC
GTAACCAACGATGTCGATACCATCGGACAAACGCTAAACAACAGTCTCGGCACGCTTGTCAGTGCGCTGGCTACTTTCGT
GGGAGCCTTGATTATGATGCTGTATACGAACTGGATCATGACCGTTACCGGAATTGTAGCTACGCTGATCGGTTTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGACAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCTTATATACAAATGCATGGAAGTCCCAGTTTATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTCGCGGTCTGTGTTGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACCATCGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCTGCAACCAATCTGCAATCGGCGGCCGCTGC
CAGTGAACGTGTATTCGAATTTCTGGGCGAAGAAGAATTGGCAGATGAGCGTCACAAGACCACGAAGCTGGACACCGCCA
AAGGGGACGTCGAATTCAAACATGTCCGTTTCGGCTATAATTCAGACCGTATGATTATCAAGGACTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTCGGTCCGACAGGCGCTGGTAAGACCACGCTTGTGAATTTACTCATGCGATTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACCCCGATTAGCCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAGGATCATGTTACTGAT
GAGCAGGTGGAAGCTGCATGTAGAGCGGTGGGGCTGCACAGTTTCATTAAAACACTGCCGCAGGGATATGATACAGTTCT
GGATGACAAAGCCAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGGGCGATGATTGAAGATTCACCTATGC
TCATTCTGGATGAGGCCACAAGCTCGGTTGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGATCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAAAATGCGGATCTAATTCTGGTCATGAAGGACGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGCTAGCAAAAGGCGGCTTCTATGCCGATCTATACAACAGTCAGTTTGAAC
ATGCATCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.672

93.669

0.531