Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MF622_RS12400 Genome accession   NZ_CP097778
Coordinates   2777208..2778971 (+) Length   587 a.a.
NCBI ID   WP_250245090.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain K 1.14     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2772208..2783971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF622_RS12375 (MF622_002468) - 2772804..2773676 (+) 873 WP_103048591.1 LysR family transcriptional regulator -
  MF622_RS12380 (MF622_002469) - 2773979..2774621 (+) 643 Protein_2385 SDR family oxidoreductase -
  MF622_RS12385 (MF622_002470) - 2774809..2775831 (+) 1023 WP_250245088.1 NADH:flavin oxidoreductase/NADH oxidase -
  MF622_RS12390 (MF622_002471) - 2776008..2776259 (+) 252 Protein_2387 methyl-accepting chemotaxis protein -
  MF622_RS12395 (MF622_002472) - 2776723..2777133 (+) 411 WP_250245089.1 MarR family transcriptional regulator -
  MF622_RS12400 (MF622_002473) rcrP 2777208..2778971 (+) 1764 WP_250245090.1 ABC transporter ATP-binding protein Regulator
  MF622_RS12405 (MF622_002474) rcrQ 2778964..2780814 (+) 1851 WP_250245091.1 ABC transporter ATP-binding protein Regulator
  MF622_RS12410 (MF622_002475) - 2780935..2781243 (+) 309 WP_250245092.1 hypothetical protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64756.04 Da        Isoelectric Point: 7.7403

>NTDB_id=692232 MF622_RS12400 WP_250245090.1 2777208..2778971(+) (rcrP) [Paenibacillus polymyxa strain K 1.14]
MLKIFKYLKKNEWMLVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNSFSTASLITRSTNDVTQIQSVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAALILMLSVIVVFALPSFQRIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYCIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIMEVLNTE
SSIVNGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYNQQALHNKIGYVPQRAVLFNGTVVSNVSYGDNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=692232 MF622_RS12400 WP_250245090.1 2777208..2778971(+) (rcrP) [Paenibacillus polymyxa strain K 1.14]
ATGCTAAAGATATTCAAATATCTCAAGAAAAATGAATGGATGCTCGTGCTTTGCAGCCTAGCTTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTACCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACGGAAGGAACGCCTGTGTCCGAAC
TGCTGATCCCCGGCAGTTACATGTTGTTTTGTGCTGTCGGCAGTATGATTGCATCTATTATTGTGGGCTATTTCGCGGCA
AAGGTGGCTGCTGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCGATGGAAGAAATGAA
CAGCTTTTCGACGGCAAGCCTCATTACCCGCTCCACGAATGATGTTACGCAGATTCAATCGGTGGTTGCGTTGGGGCTAC
AGGTGATCATCAAGGCACCGATTCTGGCCGTATGGGCCATTGTAAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCC
ACAGGAGCGGCCGTAGCTGCTCTGATTCTAATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTCCAGAGAATCCA
GCGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGATCGGACTTCGGGTAGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTTGAGTTGACGAATACAAACCTGTTTGCGAACCGATTAATGACGATG
ATTGGCCCAGGTATGACCTTTATTATGTCAGGTCTGAGTGTCTCTATCTATTGTATCGGCGCTTACCTGATTAACGGGGC
GGCCGTACCAGACCGCATCACGTTGTTCTCCAATATGGTCGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATATTCATTCTGATGCCTCGCGCCTCGATCTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGTATCGTTAACGGGCATGAGACGACTGGAGAAGAAAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGACGCGGAGGAAGCCGTGCTTCGCAACATTAGCTTTACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGAAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTATGATGTGACCGAGGGAGAGGTACTCGTGGAT
GGTGTGAATGTCAGGAACTATAATCAGCAGGCACTCCATAACAAAATCGGGTATGTCCCCCAGAGAGCTGTACTGTTCAA
CGGTACGGTGGTATCCAACGTTTCGTATGGCGATAACGGAAGAGCAGGAGCTTCGGAGAAACTCGTTAAAGAAGCCGTTG
GTATTGCTCAGGGAACGGAGTTTGTCGAAAAAATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGAGCGAACGTA
TCCGGTGGTCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAAATTTATATTTTCGATGATTCCTT
CTCAGCATTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAGGAAACCGGCCACGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACTATCAAAGACGCTGATCGGATTATCGTGCTGGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAGATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.421

100

0.535