Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MF625_RS18400 Genome accession   NZ_CP097771
Coordinates   4186739..4187164 (-) Length   141 a.a.
NCBI ID   WP_126666545.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 3.13     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4186739..4200842 4186739..4187164 within 0


Gene organization within MGE regions


Location: 4186739..4200842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF625_RS18400 (MF625_003668) nucA/comI 4186739..4187164 (-) 426 WP_126666545.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MF625_RS18405 (MF625_003669) - 4187397..4188286 (+) 890 Protein_3572 SPRY domain-containing protein -
  MF625_RS18410 (MF625_003670) - 4188473..4188892 (-) 420 WP_126666546.1 hypothetical protein -
  MF625_RS18415 (MF625_003671) - 4188945..4189156 (-) 212 Protein_3574 hypothetical protein -
  MF625_RS18420 (MF625_003672) - 4189349..4190764 (-) 1416 WP_126666547.1 helix-turn-helix domain-containing protein -
  MF625_RS18425 (MF625_003673) - 4191008..4191460 (+) 453 WP_107733496.1 hypothetical protein -
  MF625_RS18430 (MF625_003674) - 4191578..4191969 (-) 392 Protein_3577 nuclease -
  MF625_RS18435 (MF625_003675) - 4192119..4192349 (-) 231 WP_218975343.1 hypothetical protein -
  MF625_RS18440 (MF625_003676) - 4193143..4194384 (-) 1242 WP_126666548.1 hypothetical protein -
  MF625_RS18445 (MF625_003677) - 4194386..4195789 (-) 1404 WP_126666549.1 hypothetical protein -
  MF625_RS18450 (MF625_003678) - 4195792..4196178 (-) 387 WP_126666550.1 hypothetical protein -
  MF625_RS18455 (MF625_003679) - 4196853..4197122 (-) 270 WP_126666551.1 phage holin family protein -
  MF625_RS18460 (MF625_003680) abc-f 4197657..4199144 (+) 1488 WP_113050213.1 ribosomal protection-like ABC-F family protein -
  MF625_RS18465 (MF625_003681) - 4199445..4200125 (-) 681 WP_031461608.1 SDR family NAD(P)-dependent oxidoreductase -
  MF625_RS18470 (MF625_003682) - 4200270..4200842 (+) 573 WP_235332718.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15350.34 Da        Isoelectric Point: 6.7126

>NTDB_id=692212 MF625_RS18400 WP_126666545.1 4186739..4187164(-) (nucA/comI) [Paenibacillus polymyxa strain R 3.13]
MIKGILRGLIVFLLAAIFSVQGVFAEPTAISQQAAGYTLEFPSSRYPETGAHIRDAIANGHSAVCTIDRDGAEENRKESL
KGYPTKKGYDRDEWPMAMCAEGGAGADIRYITPSDNRGAGSWVSHQLDKYDDGTKVRLIVK

Nucleotide


Download         Length: 426 bp        

>NTDB_id=692212 MF625_RS18400 WP_126666545.1 4186739..4187164(-) (nucA/comI) [Paenibacillus polymyxa strain R 3.13]
ATGATAAAAGGAATCTTAAGAGGATTAATTGTATTTTTACTAGCTGCTATTTTTTCCGTTCAAGGCGTCTTTGCTGAACC
GACAGCAATTAGTCAACAAGCAGCTGGGTATACGTTAGAGTTTCCAAGTTCACGCTACCCTGAAACCGGAGCACACATAA
GGGATGCTATTGCAAACGGACATTCTGCTGTATGTACCATTGATCGAGATGGGGCAGAGGAGAATAGGAAGGAATCTTTA
AAGGGCTATCCAACTAAAAAAGGATATGACCGAGATGAATGGCCAATGGCAATGTGTGCAGAAGGTGGCGCAGGTGCTGA
TATAAGATACATAACCCCTAGTGATAATCGGGGAGCAGGATCATGGGTAAGTCATCAGTTAGATAAGTATGATGATGGTA
CAAAGGTAAGACTCATAGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.29

87.943

0.539