Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MF625_RS16930 Genome accession   NZ_CP097771
Coordinates   3824408..3826258 (+) Length   616 a.a.
NCBI ID   WP_126666804.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 3.13     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3819408..3831258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF625_RS16910 (MF625_003373) - 3819625..3821298 (+) 1674 WP_126666802.1 RICIN domain-containing protein -
  MF625_RS16915 - 3821465..3821614 (+) 150 Protein_3274 nitronate monooxygenase -
  MF625_RS16920 (MF625_003374) - 3822165..3822572 (+) 408 WP_025364880.1 MarR family winged helix-turn-helix transcriptional regulator -
  MF625_RS16925 (MF625_003375) rcrP 3822652..3824421 (+) 1770 WP_126666803.1 ABC transporter ATP-binding protein Regulator
  MF625_RS16930 (MF625_003376) rcrQ 3824408..3826258 (+) 1851 WP_126666804.1 ABC transporter ATP-binding protein Regulator
  MF625_RS16935 (MF625_003377) - 3826466..3827233 (+) 768 WP_016818807.1 IclR family transcriptional regulator -
  MF625_RS16940 (MF625_003378) - 3827420..3828109 (+) 690 WP_019687275.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68218.17 Da        Isoelectric Point: 6.8232

>NTDB_id=692211 MF625_RS16930 WP_126666804.1 3824408..3826258(+) (rcrQ) [Paenibacillus polymyxa strain R 3.13]
MDKNEHTVGSKHIEMKQRGPIGRGPTEGMGTGKKANDFKKNIRQLLSYIKAYMPMIILSMVLALAGSVFNVIGPDKLSDI
ANLIQEGIVTGIDVNAVQKIVLVLVVLYGLGLIFNYFQGFITVTVSQRLTKKMRTELSRKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTITGIVATLIGFSLMTIIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCIVGALLVNQHVITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELVDESDKTMKLDNAKGDVEFKHVRFGYNEDHMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRENVHKLFCMVLQDTWLFEGTIRENIVFSKEHVTD
EQVEAACRAVGLHSFLKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHEELLGKNGFYADLYNSQFEHVS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=692211 MF625_RS16930 WP_126666804.1 3824408..3826258(+) (rcrQ) [Paenibacillus polymyxa strain R 3.13]
ATGGACAAGAATGAACACACCGTCGGCAGTAAGCACATCGAAATGAAACAGCGAGGTCCCATAGGTAGAGGTCCTACGGA
AGGGATGGGAACTGGTAAAAAAGCGAATGATTTTAAAAAGAACATTCGCCAGCTCTTATCCTACATCAAGGCTTATATGC
CTATGATCATACTCTCTATGGTGCTGGCGCTGGCCGGTTCCGTCTTCAACGTGATTGGTCCAGATAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATCGTAACAGGGATTGATGTGAATGCTGTTCAGAAGATTGTTCTTGTATTGGTAGTTTT
GTATGGTCTCGGCCTTATCTTTAATTATTTCCAAGGATTCATTACGGTAACCGTGTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCCCGAAAAATCAATCATATGCCTTTGAAGTATTTTGATGCTACGAGCTATGGTAATGTGCTTAGCCGT
GTGACCAATGATGTCGATACGATTGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGCGCACTGGCAACCTTTGT
GGGTGCATTGATTATGATGCTATATACGAACTGGATCATGACCATTACTGGGATTGTAGCTACGCTGATCGGTTTTTCAC
TGATGACCATAATTATGAAGCATTCACAGAAATATTTTGTAGCACAACAAGCAGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAAGAAGTGTTTCATGGCATTAA
TGGCCGCTTGTATACAAATGCATGGAAATCCCAGTTCATGTCTGGCCTGATGATGCCGGTTATGATGTTCATCGGGAATT
TCGGTTATGTTGCGGTCTGTATCGTGGGCGCTTTGCTGGTGAACCAACATGTTATAACGATCGGAACTATCGTGGCCTTT
ATGGTGTATATTCGTCTGTTTACACAGCCTTTGTCACAGTTAGCGCAGGCTGCAACCAACTTGCAATCGGCGGCAGCTGC
TAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGTGGATGAGAGCGACAAGACCATGAAGCTGGATAACGCCA
AAGGGGATGTCGAATTTAAGCATGTCCGTTTCGGTTATAATGAAGACCATATGATTATAAAGGACTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTTGGCCCTACAGGTGCCGGTAAGACGACGCTCGTGAATTTGCTCATGCGGTTCTA
TGAGCTGAACGGAGGGGAAATTTATATTGATGGAACTCCGATCAGCCAATTAACACGTGAGAATGTTCATAAATTATTCT
GCATGGTACTGCAGGATACATGGCTGTTTGAAGGAACGATTCGTGAGAATATCGTCTTTTCCAAAGAGCATGTTACCGAT
GAACAGGTAGAAGCCGCATGTAGAGCAGTGGGTCTGCATAGCTTCCTTAAAACTTTACCGCAGGGTTATGATACAGTGCT
AGACGACAAAGCTAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCGCCCATGC
TTATTCTGGACGAGGCCACAAGTTCGGTCGATACGCGTACGGAGTTACTGATTCAACAAGCGATGGACCGACTTACTGTT
GGGAAAACCTCCTTTGTGATTGCCCACCGTCTCTCAACGATTAAGAACGCCGATCTGATTCTGGTTATGAAGGACGGTAA
CATTATTGAAACGGGTAATCATGAGGAATTGCTAGGTAAAAACGGATTCTATGCCGATTTATACAACAGCCAGTTTGAAC
ATGTATCCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(56-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.806

93.669

0.523