Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MF625_RS16925 Genome accession   NZ_CP097771
Coordinates   3822652..3824421 (+) Length   589 a.a.
NCBI ID   WP_126666803.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 3.13     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3817652..3829421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF625_RS16905 (MF625_003372) - 3818333..3819055 (-) 723 WP_250264500.1 LysR family transcriptional regulator -
  MF625_RS25545 - 3819048..3819098 (+) 51 Protein_3272 hypothetical protein -
  MF625_RS16910 (MF625_003373) - 3819625..3821298 (+) 1674 WP_126666802.1 RICIN domain-containing protein -
  MF625_RS16915 - 3821465..3821614 (+) 150 Protein_3274 nitronate monooxygenase -
  MF625_RS16920 (MF625_003374) - 3822165..3822572 (+) 408 WP_025364880.1 MarR family winged helix-turn-helix transcriptional regulator -
  MF625_RS16925 (MF625_003375) rcrP 3822652..3824421 (+) 1770 WP_126666803.1 ABC transporter ATP-binding protein Regulator
  MF625_RS16930 (MF625_003376) rcrQ 3824408..3826258 (+) 1851 WP_126666804.1 ABC transporter ATP-binding protein Regulator
  MF625_RS16935 (MF625_003377) - 3826466..3827233 (+) 768 WP_016818807.1 IclR family transcriptional regulator -
  MF625_RS16940 (MF625_003378) - 3827420..3828109 (+) 690 WP_019687275.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65133.44 Da        Isoelectric Point: 7.0452

>NTDB_id=692210 MF625_RS16925 WP_126666803.1 3822652..3824421(+) (rcrP) [Paenibacillus polymyxa strain R 3.13]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPMSDLLIPGIYMLLCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANTELMNTNLFANRLMTM
VGPGMTFIMSGLSVSIYWIGAYLINGTAVPDRISLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIIDGHETAGEEGVMGQVEFRNVSFKYPDAEEPVLRNISFTAKQGETVAFIGATGSGKTSVINLISRFYDVTEGEVLVD
GVNVRNYKQQTLHNKIGYVPQRAVLFSGTVASNVSYGDNGRAEASEKLVKTAVEIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYVFDDSFSALDYRTDRILRSALKQETGHATTLIVAQRIGTIKDADRIIVLDQGEIVGNGT
HEELMANCSTYQEIAYSQLSKEELVHGQE

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=692210 MF625_RS16925 WP_126666803.1 3822652..3824421(+) (rcrP) [Paenibacillus polymyxa strain R 3.13]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGCTCTGCAGCTTGGCCTTCATCGTTGTGCAGGT
GTGGCTGGATTTGAAGCTGCCTGATTATATGGCCGAAATTACAACCAAGCTGCAAACTGCAGGAACGCCGATGTCGGACC
TGCTGATTCCCGGTATTTATATGCTGTTATGTGCTGTCGGCAGTATGATTGCATCTATTATTGTCGGCTATTTTGCGGCA
AAGGTCGCGGCAGGGCTGGCCATGCGCCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCGATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTTATCACCCGTTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGTTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAGATCGCAGATAAAAACTGGCAGTGGACCGCCTCT
ACAGGAGTGGCTGTGGCTGTCCTGATCCTGATGCTGAGTGTCATTGTTATTTTTGCTCTCCCCAGTTTCCAAAAAATCCA
ACGTCTCACTGATAATCTGAACAGGGTAACACGTGAGCATCTGACGGGGCTTCGCGTAGTGCGTGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTTGGGCAGGCCAATACCGAATTGATGAATACCAACCTGTTTGCGAACCGGTTAATGACAATG
GTTGGTCCGGGCATGACCTTTATTATGTCGGGTCTGAGTGTCTCGATCTATTGGATTGGCGCTTACCTGATTAACGGAAC
GGCCGTGCCGGACCGCATTTCGCTATTCTCTAATATGGTCGTATTCTCATCTTATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATATTCTTCCTGATGCCTCGAGCTTCGATTTCCGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCCCGCATCATTGACGGGCATGAGACAGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTCCGTAATGTCAGCTTTAA
ATATCCGGATGCGGAGGAGCCTGTGCTTCGCAACATTAGCTTTACGGCAAAACAAGGCGAGACGGTTGCCTTTATTGGCG
CAACAGGCAGTGGTAAAACCAGCGTAATCAATCTGATTTCTCGTTTCTACGATGTGACTGAGGGAGAGGTACTCGTGGAT
GGTGTGAATGTCAGAAACTATAAGCAGCAGACACTCCATAACAAAATCGGGTATGTCCCACAGAGAGCCGTACTTTTCAG
CGGTACAGTGGCATCCAATGTTTCGTATGGCGATAACGGAAGAGCAGAAGCTTCGGAGAAACTCGTCAAAACAGCCGTGG
AGATTGCCCAAGGCACGGAGTTTGTCGAAAAAATGGACGGTCAGTATCAAGGACGGATTTCACAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAGATTTATGTCTTCGATGATTCCTT
CTCGGCACTCGACTACAGAACAGACCGGATTCTGCGCTCGGCGCTTAAACAAGAAACCGGCCATGCTACGACACTCATTG
TTGCTCAGCGCATAGGCACCATTAAGGACGCTGACCGGATTATCGTTCTGGACCAGGGCGAGATTGTAGGGAACGGCACA
CACGAAGAGCTGATGGCGAATTGCAGCACCTATCAGGAGATCGCTTATTCGCAGCTTTCAAAGGAGGAACTCGTACATGG
ACAAGAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.167

100

0.531