Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MF625_RS00575 Genome accession   NZ_CP097771
Coordinates   127973..128926 (-) Length   317 a.a.
NCBI ID   WP_250247871.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 3.13     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 122973..133926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF625_RS00550 (MF625_000110) - 123441..124352 (-) 912 WP_250247869.1 aldo/keto reductase -
  MF625_RS00555 (MF625_000111) - 124511..125254 (-) 744 WP_250247870.1 alpha/beta hydrolase -
  MF625_RS00560 (MF625_000112) - 125288..126268 (-) 981 WP_031462258.1 siderophore ABC transporter substrate-binding protein -
  MF625_RS00565 (MF625_000113) - 126281..127039 (-) 759 WP_025365864.1 ABC transporter ATP-binding protein -
  MF625_RS00570 (MF625_000114) - 127033..127983 (-) 951 WP_126666631.1 iron chelate uptake ABC transporter family permease subunit -
  MF625_RS00575 (MF625_000115) ceuB 127973..128926 (-) 954 WP_250247871.1 ABC transporter permease Machinery gene
  MF625_RS00580 (MF625_000116) - 129251..129928 (+) 678 WP_153794466.1 response regulator transcription factor -
  MF625_RS00585 (MF625_000117) - 129929..130846 (+) 918 WP_250247872.1 sensor histidine kinase -
  MF625_RS00590 (MF625_000118) - 130954..131631 (+) 678 WP_250247873.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34718.70 Da        Isoelectric Point: 9.9012

>NTDB_id=692190 MF625_RS00575 WP_250247871.1 127973..128926(-) (ceuB) [Paenibacillus polymyxa strain R 3.13]
MKLRYLILAFIVLAFASVFIGVHDVTPLDLFHLSNDQAQVLLISRFPRLVSIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=692190 MF625_RS00575 WP_250247871.1 127973..128926(-) (ceuB) [Paenibacillus polymyxa strain R 3.13]
ATGAAATTGCGCTATTTAATACTGGCTTTTATCGTACTGGCCTTCGCCTCGGTGTTTATCGGTGTGCATGATGTAACTCC
ACTTGATTTGTTCCACTTATCCAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTCCCACGTTTGGTCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTCATCATGCAGCAGCTTACTCGGAACCGGTTTGTTTCGCCGACCACCGCA
GGCACGATGGATGCGGCACGATTAGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACCCTAATTTTCATGAAGATACTGGATAAAATCCGTTTTAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTGACGACTTTTTTTGCTTACAAATACAATCTGATT
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTCATTATGAGTGGTCGCTACGAGATGCTGTATCTCAGTGTTCC
TTTGGTCGCGTTGGCGTACATATATGCGAACCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCAGCCAATTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATTGTAGCTTTGGTGTCTTCTGTTGTCATCTTAACCGTCGGGACG
ATTCCCTTTTTGGGACTGGTTGTACCCAATCTGGTCAGTATGTACATGGGGGATAATCTGAAAAAAAGCCTAGCACATAC
AGCGATCTTGGGCGCCGTTTTTGTGCTTTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAGATTTCTGTAG
GGCTTACGGTTGGTGTAATCGGAAGCGCGTTGTTCTTGTACTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.476

99.369

0.502