Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MF626_RS23440 Genome accession   NZ_CP097770
Coordinates   5229965..5230918 (+) Length   317 a.a.
NCBI ID   WP_129550005.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 4.5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5224965..5235918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF626_RS23425 (MF626_004671) - 5227258..5227935 (-) 678 WP_250260394.1 ABC transporter ATP-binding protein -
  MF626_RS23430 (MF626_004672) - 5228044..5228961 (-) 918 WP_250260395.1 sensor histidine kinase -
  MF626_RS23435 (MF626_004673) - 5228963..5229640 (-) 678 WP_250262171.1 response regulator transcription factor -
  MF626_RS23440 (MF626_004674) ceuB 5229965..5230918 (+) 954 WP_129550005.1 ABC transporter permease Machinery gene
  MF626_RS23445 (MF626_004675) - 5230908..5231858 (+) 951 WP_013312013.1 iron chelate uptake ABC transporter family permease subunit -
  MF626_RS23450 (MF626_004676) - 5231852..5232610 (+) 759 WP_028541804.1 ABC transporter ATP-binding protein -
  MF626_RS23455 (MF626_004677) - 5232623..5233603 (+) 981 WP_069290424.1 siderophore ABC transporter substrate-binding protein -
  MF626_RS23460 (MF626_004678) - 5233637..5234380 (+) 744 WP_069290423.1 alpha/beta hydrolase -
  MF626_RS23465 (MF626_004679) - 5234538..5235449 (+) 912 WP_069290422.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34746.75 Da        Isoelectric Point: 9.9012

>NTDB_id=692186 MF626_RS23440 WP_129550005.1 5229965..5230918(+) (ceuB) [Paenibacillus polymyxa strain R 4.5]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=692186 MF626_RS23440 WP_129550005.1 5229965..5230918(+) (ceuB) [Paenibacillus polymyxa strain R 4.5]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAGGCGCAGGTGCTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGATTGATCATGCAGCAGCTTACCCGAAACCGATTTGTATCGCCCACCACCGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCGGGATTCTGGACGAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATTTGATC
CAGGGCATCTCTTCGTGGATGCAGGGGGATTTTTCTTTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCATTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACTGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTATCCTCTGTTGTCATCTTAACCGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGCATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGTTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508