Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MF626_RS22560 Genome accession   NZ_CP097770
Coordinates   5027688..5029061 (+) Length   457 a.a.
NCBI ID   WP_013312184.1    Uniprot ID   A0A0M1Q9A3
Organism   Paenibacillus polymyxa strain R 4.5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5022688..5034061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF626_RS22540 (MF626_004494) - 5022807..5023271 (+) 465 WP_013312188.1 CtsR family transcriptional regulator -
  MF626_RS22545 (MF626_004495) - 5023341..5023865 (+) 525 WP_023990574.1 UvrB/UvrC motif-containing protein -
  MF626_RS22550 (MF626_004496) - 5023894..5024958 (+) 1065 WP_039274956.1 protein arginine kinase -
  MF626_RS22555 (MF626_004497) clpC 5025003..5027447 (+) 2445 WP_250260327.1 ATP-dependent protease ATP-binding subunit ClpC -
  MF626_RS22560 (MF626_004498) radA 5027688..5029061 (+) 1374 WP_013312184.1 DNA repair protein RadA Machinery gene
  MF626_RS22565 (MF626_004499) disA 5029074..5030150 (+) 1077 WP_013312183.1 DNA integrity scanning diadenylate cyclase DisA -
  MF626_RS22570 (MF626_004500) pssA 5030205..5030951 (+) 747 WP_025723803.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MF626_RS22575 (MF626_004501) - 5031144..5032229 (+) 1086 WP_250260328.1 PIN/TRAM domain-containing protein -
  MF626_RS22580 (MF626_004502) ispD 5032299..5032997 (+) 699 WP_061831389.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MF626_RS22585 (MF626_004503) ispF 5032994..5033470 (+) 477 WP_071643188.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49244.92 Da        Isoelectric Point: 6.7620

>NTDB_id=692185 MF626_RS22560 WP_013312184.1 5027688..5029061(+) (radA) [Paenibacillus polymyxa strain R 4.5]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKETRILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVSNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHF
PSPRRMGTGVDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=692185 MF626_RS22560 WP_013312184.1 5027688..5029061(+) (radA) [Paenibacillus polymyxa strain R 4.5]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACGGAATGTGGTTATGAATCGCCCAAATGGTACGGAAAATGTCCTGGATG
CCAGGCATGGAATTCCATGGTCGAAGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGGTCTTCCCTTCTTACTCATA
GCACAAAAGACAAGCCACTCCCTATTATAGAGGTGGAGAGTGGCAAAGAAACACGAATTTTGACGGGAATTGGCGAATTG
AATCGAGTACTCGGTGGAGGTGTGGTGCCGGGTTCACTCGTTTTGGTGGGCGGTGATCCGGGAATCGGTAAATCTACGCT
CATGCTGCAAACATCTAATGAACTGGCTTTAACTGGTTTAAAGGTGCTGTACGTGTCTGGTGAGGAATCTGTCCGTCAAA
CGAAACTACGTGCAGATCGGCTCGGTGCCTTGTCCCCCAGCCTATACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCGGTGGACAGCTTGAAGCCGGAGTTTTTGGTCATCGACTCGATACAGACTGTATATTTGCCTGAGGTGACGAGTGC
ACCAGGTAGTGTGGCTCAGGTGCGGGAGTGTACTTCACGCTTTATGCGAATTGCCAAGGGGCTAGGTATTGCTACGGTAT
TGGTAGGACATGTGACCAAGGAAGGGGCCATTGCAGGTCCGCGTTTGTTGGAGCATATGGTTGATTGTGTACTTTATTTT
GAAGGAGAGCGTCACCATACGTATCGGCTTTTGCGTGCAGTTAAAAATCGTTTCGGTTCTACAAATGAAATTGGTATTTT
TGAAATGGCTGAAAGCGGTTTGCGTGAGGTGTCGAATCCTTCTGAACTTTTCCTGTCTGAACGACCACTGGGTGTGGCAG
GTTCTACTGTTGTAGCCAGTATGGAAGGAACCCGGCCTGTATTGGTTGAACTGCAAGCATTGATTGCAGCTACACATTTT
CCCTCTCCACGCCGAATGGGCACAGGAGTCGACCATCATCGAATGGGATTAATCATAGCCGTGCTAGAAAAGCGGATGGG
CATGTTTTTGCAAAACCAGGACGCTTATCTCAACGTAGCCGGAGGCGTGAAGTTGGATGAACCGGCGGTGGATTTGGCTA
TAGCTGTGAGTATTGCTTCCAGCTTTAGGGATGCTCCTACAAAGCCGTATGATGTGATTTTTGGCGAGGTGGGACTGACA
GGTGAGGTGCGCGCGGTATCCCGAGCAGAACAGCGAGTACGAGAAGCGGAGAAACTAGGTTTCAAACGGGTGATCATGCC
GGAGAAAAGCTTGAAGGGCTGGACACATCCGAAAGGGATACAAATTATAGGAGTAGGAACGGTGGCAGATGCACTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q9A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.031

100

0.672
  radA Streptococcus pneumoniae Rx1

58.85

98.906

0.582
  radA Streptococcus pneumoniae D39

58.85

98.906

0.582
  radA Streptococcus pneumoniae R6

58.85

98.906

0.582
  radA Streptococcus pneumoniae TIGR4

58.85

98.906

0.582
  radA Streptococcus mitis NCTC 12261

58.85

98.906

0.582
  radA Streptococcus mitis SK321

58.628

98.906

0.58