Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   N6H00_RS29250 Genome accession   NZ_CP114036
Coordinates   6909687..6910490 (-) Length   267 a.a.
NCBI ID   WP_268974816.1    Uniprot ID   -
Organism   Streptomyces sp. S465     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6904687..6915490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6H00_RS29240 (N6H00_29240) - 6906638..6907336 (+) 699 WP_268974814.1 GNAT family N-acetyltransferase -
  N6H00_RS29245 (N6H00_29245) - 6907529..6909529 (+) 2001 WP_268974815.1 ATP-dependent DNA helicase -
  N6H00_RS29250 (N6H00_29250) dinR/lexA 6909687..6910490 (-) 804 WP_268974816.1 transcriptional repressor LexA Regulator
  N6H00_RS29255 (N6H00_29255) nrdR 6910932..6911453 (+) 522 WP_030842751.1 transcriptional regulator NrdR -
  N6H00_RS29260 (N6H00_29260) - 6911568..6914429 (+) 2862 WP_268974818.1 vitamin B12-dependent ribonucleotide reductase -
  N6H00_RS29265 (N6H00_29265) - 6914622..6915227 (+) 606 WP_268974819.1 YdbC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29165.94 Da        Isoelectric Point: 7.4240

>NTDB_id=692178 N6H00_RS29250 WP_268974816.1 6909687..6910490(-) (dinR/lexA) [Streptomyces sp. S465]
MTTTAESATFTTQERSQSRLEQTHAMNQTRPMNDDTTTPEGQKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRR
GYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPADTTGKPAASYVPLVGRIAAGGPI
LAEESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLL
PHNAAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 804 bp        

>NTDB_id=692178 N6H00_RS29250 WP_268974816.1 6909687..6910490(-) (dinR/lexA) [Streptomyces sp. S465]
GTGACCACCACCGCAGAGAGCGCAACCTTTACCACCCAAGAGCGCTCCCAGAGCCGACTCGAACAGACACACGCGATGAA
CCAGACCCGCCCGATGAACGACGACACCACGACCCCGGAGGGCCAAAAGCCCACGCGCTCGCTACCAGGGCGACCTCCAG
GCATCCGGGCGGACAGCTCAGGGCTGACCGACCGGCAGCGGCGCGTCATCGAGGTCATTCGCGACTCTGTGCAGCGGCGC
GGTTACCCCCCGTCCATGCGGGAGATCGGCCAGGCGGTGGGCCTCTCCAGCACCTCGTCCGTCGCCCATCAGCTGATGGC
TCTGGAGCGAAAGGGCTTTCTGCGGCGCGATCCCCATCGGCCCCGGGCCTACGAGGTCCGCGGCTCCGACCAGCCCAGCA
CCCAGCCCGCGGACACCACCGGCAAGCCCGCCGCCTCTTATGTGCCGCTGGTCGGCCGGATCGCGGCAGGTGGCCCGATC
CTCGCCGAGGAGTCGGTCGAGGATGTCTTCCCGCTCCCCCGGCAGCTGGTCGGCGACGGTGAGCTCTTTGTGCTGAAGGT
GGTCGGCGACTCCATGATCGAAGCCGCCATCTGCGACGGTGACTGGGTGACGGTGCGCCGCCAGCCCGTCGCCGAGAACG
GTGACATCGTCGCCGCGATGCTCGACGGCGAGGCCACGGTGAAGCGCTTCAAGCGTGAGGACGGCCATGTGTGGCTGCTT
CCGCACAACGCCGCCTACCAGCCGATCCCCGGCGACGAGGCCACCATTCTGGGCAAGGTGGTCGCGGTGCTGCGGCGCGT
CTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(149-261)

LexA DNA binding domain (LexA_DNA_bind)

(60-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

79.401

0.367