Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MF626_RS07030 Genome accession   NZ_CP097770
Coordinates   1621835..1623598 (-) Length   587 a.a.
NCBI ID   WP_250261361.1    Uniprot ID   A0AAE9L969
Organism   Paenibacillus polymyxa strain R 4.5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1616835..1628598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF626_RS07015 (MF626_001399) - 1619028..1619264 (-) 237 WP_250261359.1 hypothetical protein -
  MF626_RS07020 (MF626_001400) - 1619563..1619871 (-) 309 WP_061830895.1 hypothetical protein -
  MF626_RS07025 (MF626_001401) rcrQ 1619992..1621842 (-) 1851 WP_250261360.1 ABC transporter ATP-binding protein Regulator
  MF626_RS07030 (MF626_001402) rcrP 1621835..1623598 (-) 1764 WP_250261361.1 ABC transporter ATP-binding protein Regulator
  MF626_RS07035 (MF626_001403) - 1623673..1624083 (-) 411 WP_250261362.1 MarR family winged helix-turn-helix transcriptional regulator -
  MF626_RS07040 (MF626_001404) - 1624674..1625696 (-) 1023 WP_250261363.1 NADH:flavin oxidoreductase/NADH oxidase -
  MF626_RS07045 (MF626_001405) - 1625870..1626097 (-) 228 Protein_1395 NAD(P)H-binding protein -
  MF626_RS07050 (MF626_001406) aiiA 1626415..1627173 (+) 759 WP_165179822.1 quorum-quenching N-acyl homoserine lactonase AiiA -
  MF626_RS07055 (MF626_001407) - 1627188..1628510 (+) 1323 WP_061830911.1 MFS transporter -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64771.05 Da        Isoelectric Point: 7.0348

>NTDB_id=692167 MF626_RS07030 WP_250261361.1 1621835..1623598(-) (rcrP) [Paenibacillus polymyxa strain R 4.5]
MLKIFKYLKKNEWMLVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAVLILMLSVIVVFALPSFQRIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYCIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIMEVLNTE
SSIVNGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKQGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRDYNQQALHNKIGYVPQRAVLFNGTVVSNVSYGDNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=692167 MF626_RS07030 WP_250261361.1 1621835..1623598(-) (rcrP) [Paenibacillus polymyxa strain R 4.5]
ATGCTAAAGATATTCAAATATCTCAAGAAAAATGAATGGATGCTCGTACTTTGCAGCCTAGCTTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTGCCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACGGAAGGAACGCCTGTGTCCGAAC
TGCTGATTCCCGGTAGTTACATGTTGTTTTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTGGGCTATTTCGCGGCA
AAGGTGGCTGCTGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCGATGGAAGAGATGAA
CAGCTTTTCGACGGCAAGCCTCATTACCCGCTCTACGAACGATGTTACGCAGATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCACCTATTCTGGCCGTATGGGCTATTGTGAAGATTGCGGATAAAAACTGGCAGTGGACCGCGTCC
ACAGGAGCGGCCGTGGCTGTTCTGATTTTAATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTTCAGAGAATCCA
GCGTCTGACCGATAATCTGAACAGGGTAACACGTGAGCATCTGATCGGACTTCGGGTAGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTTGAGTTGACGAATACAAACCTGTTCGCGAACCGATTAATGACGATG
ATTGGCCCAGGTATGACCTTTATTATGTCAGGTCTGAGTGTCTCTATCTATTGTATCGGCGCTTACCTGATTAACGGGGC
GGCCGTACCAGACCGCATCACGTTGTTCTCCAATATGGTCGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATATTCATTCTGATGCCTCGCGCCTCGATCTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGCATCGTTAACGGGCATGAGACGACTGGAGAAGAGAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGACGCGGAGGAGGCCGTGCTTCGCAACATTAGCTTTACGGCGAAACAAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGAAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTATGATGTGACCGAGGGAGAGGTACTCGTGGAT
GGTGTGAATGTCAGGGACTATAATCAGCAGGCACTCCATAACAAAATCGGGTATGTCCCCCAGAGAGCTGTACTGTTCAA
CGGTACGGTTGTATCCAACGTTTCGTATGGCGATAACGGAAGAGCAGGAGCTTCGGAGAAACTCGTTAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTCGAAAAAATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAAATTTATATATTCGATGATTCCTT
CTCGGCATTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCACGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACTATCAAAGACGCTGATCGGATTATCGTGCTGGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAAATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.588

100

0.537