Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MF626_RS07025 Genome accession   NZ_CP097770
Coordinates   1619992..1621842 (-) Length   616 a.a.
NCBI ID   WP_250261360.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 4.5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1614992..1626842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF626_RS07015 (MF626_001399) - 1619028..1619264 (-) 237 WP_250261359.1 hypothetical protein -
  MF626_RS07020 (MF626_001400) - 1619563..1619871 (-) 309 WP_061830895.1 hypothetical protein -
  MF626_RS07025 (MF626_001401) rcrQ 1619992..1621842 (-) 1851 WP_250261360.1 ABC transporter ATP-binding protein Regulator
  MF626_RS07030 (MF626_001402) rcrP 1621835..1623598 (-) 1764 WP_250261361.1 ABC transporter ATP-binding protein Regulator
  MF626_RS07035 (MF626_001403) - 1623673..1624083 (-) 411 WP_250261362.1 MarR family winged helix-turn-helix transcriptional regulator -
  MF626_RS07040 (MF626_001404) - 1624674..1625696 (-) 1023 WP_250261363.1 NADH:flavin oxidoreductase/NADH oxidase -
  MF626_RS07045 (MF626_001405) - 1625870..1626097 (-) 228 Protein_1395 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67945.57 Da        Isoelectric Point: 6.2783

>NTDB_id=692166 MF626_RS07025 WP_250261360.1 1619992..1621842(-) (rcrQ) [Paenibacillus polymyxa strain R 4.5]
MDKNEHTVDSQQMKMNQRGPMGKGPAGGKGTGEKANNFKKTISQLVSYSKAYVPMIILAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIIATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTIKLDTAKGDVEFKHVRFGYNADRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAACRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=692166 MF626_RS07025 WP_250261360.1 1619992..1621842(-) (rcrQ) [Paenibacillus polymyxa strain R 4.5]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGCGAGGTCCCATGGGTAAAGGACCCGCGGG
GGGCAAGGGTACTGGTGAAAAAGCGAATAATTTTAAAAAGACCATCAGCCAGCTTGTATCCTACAGCAAGGCCTATGTGC
CTATGATTATACTAGCTATGGTACTGGCCCTGGTCGGCTCCACCCTCAACGTGATTGGCCCCGATAAGCTCAGCGATATT
GCCAACCTGATTCAGGAAGGAATCGTGACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATCTTTAACTATTTTCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAACTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGT
GTAACCAACGATGTCGATACCATTGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGTGCGCTGGCTACCTTTGT
AGGCGCCTTGATTATGATGCTGTATACGAACTGGATCATGACCGTTACCGGAATTATAGCTACGCTGATCGGCTTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACTTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCTTATATACAAATGCATGGAAGTCCCAATTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTACGTCGCGGTCTGTGTCGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACTATTGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAGTCGGCGGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTCGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCATAAAGCTGGACACTGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGCTATAATGCAGATCGTATGATCATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTCGGTCCGACAGGCGCTGGTAAGACCACGCTCGTGAATTTGCTCATGCGGTTTTA
TGAGCTAAACGATGGAGAAATCTACATTGACGGCACCCCGATTAGCCAATTAACGCGCGAAAATATTCATGAATTATTCT
GTATGGTGCTACAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACCGAT
GAGCAGGTGGAAGCTGCATGTAGAGCGGTGGGTCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGTT
GGATGACAAAGCCAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTCGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGACGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGTTGGCTAAAGGCGGCTTCTATGCCGATCTATACAATAGTCAGTTTGAAC
ATGCATCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(57-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.499

93.669

0.529