Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MF626_RS05125 Genome accession   NZ_CP097770
Coordinates   1114268..1114627 (+) Length   119 a.a.
NCBI ID   WP_416381836.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 4.5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1109268..1119627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF626_RS05095 (MF626_001021) - 1109483..1110205 (-) 723 WP_250261140.1 hypothetical protein -
  MF626_RS05100 (MF626_001022) - 1110299..1110721 (-) 423 WP_250261141.1 hypothetical protein -
  MF626_RS05105 (MF626_001023) - 1111005..1112167 (+) 1163 WP_416381835.1 IS3 family transposase -
  MF626_RS05110 - 1112227..1112613 (-) 387 WP_323873407.1 YqaE/Pmp3 family membrane protein -
  MF626_RS05115 (MF626_07975) - 1112994..1113482 (+) 489 WP_250261143.1 hypothetical protein -
  MF626_RS05120 (MF626_001026) - 1113716..1114069 (+) 354 WP_250261144.1 hypothetical protein -
  MF626_RS05125 (MF626_001027) nucA/comI 1114268..1114627 (+) 360 WP_416381836.1 sporulation protein Machinery gene
  MF626_RS05130 (MF626_001028) - 1114807..1115856 (+) 1050 WP_250261145.1 fibronectin type III domain-containing protein -
  MF626_RS05135 (MF626_001029) - 1115990..1116097 (+) 108 WP_196233322.1 sporulation protein YjcZ -
  MF626_RS05140 (MF626_001030) - 1116397..1117875 (-) 1479 WP_250261146.1 FAD-binding protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13365.89 Da        Isoelectric Point: 7.2404

>NTDB_id=692165 MF626_RS05125 WP_416381836.1 1114268..1114627(+) (nucA/comI) [Paenibacillus polymyxa strain R 4.5]
MQNQFQEVYKQQLGYTLEFPSSRYPETGAHIRDAIAAGHSAVCTIDRNGAEENRKEFLKGYPTKKGYDRDEWPMAMCAEG
GAGADIRYITPSDNRGAGSWVSHQLDKYADGTKVRFIVK

Nucleotide


Download         Length: 360 bp        

>NTDB_id=692165 MF626_RS05125 WP_416381836.1 1114268..1114627(+) (nucA/comI) [Paenibacillus polymyxa strain R 4.5]
ATGCAGAACCAGTTTCAAGAAGTGTACAAGCAGCAACTTGGGTATACGTTGGAGTTCCCAAGCTCTCGTTACCCTGAAAC
TGGAGCACACATTAGGGATGCAATTGCAGCGGGACATTCCGCCGTTTGCACGATTGACAGGAACGGGGCCGAAGAAAACA
GGAAGGAGTTTCTAAAAGGCTATCCGACTAAAAAAGGATATGACCGCGACGAGTGGCCAATGGCAATGTGTGCAGAAGGT
GGGGCAGGTGCTGATATTCGATACATAACGCCTAGTGATAACCGGGGAGCAGGATCATGGGTAAGCCATCAGTTAGATAA
GTATGCTGATGGGACTAAAGTGAGGTTTATTGTTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(22-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.269

87.395

0.597