Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MF626_RS05075 Genome accession   NZ_CP097770
Coordinates   1106853..1107227 (+) Length   124 a.a.
NCBI ID   WP_323873406.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 4.5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1101853..1112227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF626_RS05060 (MF626_001014) - 1103384..1103866 (-) 483 WP_250261135.1 DUF2294 domain-containing protein -
  MF626_RS05065 (MF626_001015) - 1104445..1104870 (-) 426 WP_250261136.1 MaoC family dehydratase -
  MF626_RS05070 (MF626_001016) - 1105363..1106781 (+) 1419 WP_250261137.1 transcriptional regulator -
  MF626_RS05075 (MF626_001017) nucA/comI 1106853..1107227 (+) 375 WP_323873406.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MF626_RS05080 (MF626_001018) - 1108016..1108627 (+) 612 WP_250261138.1 DUF4258 domain-containing protein -
  MF626_RS05085 (MF626_001019) - 1108641..1109036 (+) 396 WP_076158291.1 hypothetical protein -
  MF626_RS05090 (MF626_001020) - 1109134..1109364 (+) 231 WP_250261139.1 hypothetical protein -
  MF626_RS05095 (MF626_001021) - 1109483..1110205 (-) 723 WP_250261140.1 hypothetical protein -
  MF626_RS05100 (MF626_001022) - 1110299..1110721 (-) 423 WP_250261141.1 hypothetical protein -
  MF626_RS05105 (MF626_001023) - 1111005..1112167 (+) 1163 WP_416381835.1 IS3 family transposase -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13684.51 Da        Isoelectric Point: 6.7164

>NTDB_id=692164 MF626_RS05075 WP_323873406.1 1106853..1107227(+) (nucA/comI) [Paenibacillus polymyxa strain R 4.5]
MEDFKEKALLTWELTSADTVKLEFPSAKYPETAQHIKQAIATGKSSVCTIDRDGANHNRDLSLKGVPTKKGKDRDEWPMA
MCAEGGEGADIKYISPKDNRGAGSLVGHKLEEYKDGTKVEFIIK

Nucleotide


Download         Length: 375 bp        

>NTDB_id=692164 MF626_RS05075 WP_323873406.1 1106853..1107227(+) (nucA/comI) [Paenibacillus polymyxa strain R 4.5]
TTGGAGGATTTTAAAGAAAAAGCTCTGCTAACCTGGGAACTGACATCGGCAGACACGGTTAAGCTGGAATTTCCGTCAGC
CAAGTACCCGGAAACAGCACAGCACATTAAGCAGGCTATAGCAACCGGGAAGTCGTCAGTATGCACGATTGACCGTGATG
GAGCCAATCATAACCGCGACCTGTCTCTAAAGGGTGTACCTACCAAGAAGGGCAAGGATCGAGATGAATGGCCTATGGCG
ATGTGTGCAGAAGGTGGAGAGGGTGCAGACATTAAGTACATAAGTCCAAAGGATAATCGTGGGGCAGGTTCATTGGTAGG
CCACAAGTTGGAAGAGTATAAAGATGGAACGAAAGTGGAATTTATTATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(27-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.903

83.065

0.581