Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MF626_RS03490 Genome accession   NZ_CP097770
Coordinates   774416..774853 (+) Length   145 a.a.
NCBI ID   WP_250261007.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 4.5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 769416..779853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF626_RS03465 (MF626_000693) - 770207..770875 (+) 669 WP_013310967.1 uracil-DNA glycosylase -
  MF626_RS03470 (MF626_000694) - 770892..771314 (+) 423 WP_061828460.1 hypothetical protein -
  MF626_RS03475 (MF626_000695) - 771435..773321 (+) 1887 WP_250261005.1 Ig-like domain-containing protein -
  MF626_RS03480 (MF626_000696) - 773391..773693 (-) 303 WP_061828458.1 hypothetical protein -
  MF626_RS03485 (MF626_000697) - 774081..774275 (-) 195 WP_250261006.1 hypothetical protein -
  MF626_RS03490 (MF626_000698) nucA/comI 774416..774853 (+) 438 WP_250261007.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MF626_RS03495 (MF626_000699) - 774859..775011 (-) 153 WP_172828254.1 hypothetical protein -
  MF626_RS03500 (MF626_000700) - 775126..776946 (+) 1821 WP_250261008.1 sensor histidine kinase -
  MF626_RS03505 (MF626_000701) - 776921..778546 (+) 1626 WP_250261009.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16078.37 Da        Isoelectric Point: 9.6269

>NTDB_id=692160 MF626_RS03490 WP_250261007.1 774416..774853(+) (nucA/comI) [Paenibacillus polymyxa strain R 4.5]
MKKKLLSFIALVMLALGAYWFEGGNLFTKMTGENPPSSAQVTLQFPSGRYPETAQHIKEAIQAGKSPVCTIDREGAEQNR
KHSLAGVPTRKGYDRDEWPMAMCSEGGKDANIKYIAPKDNRGAGSWVSHQLDEYKDGTRVKFVVK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=692160 MF626_RS03490 WP_250261007.1 774416..774853(+) (nucA/comI) [Paenibacillus polymyxa strain R 4.5]
TTGAAGAAAAAATTGCTAAGTTTTATAGCTTTAGTGATGCTAGCTTTGGGCGCGTACTGGTTTGAAGGAGGCAATCTTTT
TACGAAAATGACAGGAGAGAACCCGCCTTCATCGGCTCAGGTTACGCTGCAATTCCCGTCAGGTCGTTACCCTGAAACGG
CGCAGCATATTAAGGAAGCCATTCAGGCGGGAAAATCACCGGTATGCACAATTGACCGTGAAGGAGCCGAGCAAAATCGC
AAGCATTCGCTTGCAGGTGTTCCCACTCGTAAAGGATACGATCGTGACGAATGGCCGATGGCTATGTGCTCAGAAGGTGG
CAAAGATGCAAATATCAAATACATAGCCCCTAAGGATAATCGTGGGGCAGGATCATGGGTCAGCCACCAATTGGATGAGT
ATAAGGATGGAACTCGTGTGAAATTTGTTGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.377

84.138

0.483