Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MF627_RS23670 Genome accession   NZ_CP097769
Coordinates   5211732..5212160 (+) Length   142 a.a.
NCBI ID   WP_250267304.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 4.24     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5206732..5217160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF627_RS23650 (MF627_004699) - 5208381..5208728 (+) 348 WP_250267301.1 MTH1187 family thiamine-binding protein -
  MF627_RS23660 (MF627_004701) - 5209390..5210805 (+) 1416 WP_250267302.1 transcriptional regulator -
  MF627_RS23665 (MF627_004702) - 5211033..5211524 (-) 492 WP_250267303.1 hypothetical protein -
  MF627_RS23670 (MF627_004703) nucA/comI 5211732..5212160 (+) 429 WP_250267304.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MF627_RS23675 (MF627_004704) - 5212449..5213297 (+) 849 WP_250267305.1 MSCRAMM family protein -
  MF627_RS23680 (MF627_08825) - 5213294..5213650 (+) 357 WP_250267306.1 hypothetical protein -
  MF627_RS23685 (MF627_004706) - 5213866..5214099 (+) 234 WP_250267307.1 hypothetical protein -
  MF627_RS23690 (MF627_004707) - 5214219..5215082 (-) 864 WP_250267308.1 LysR family transcriptional regulator -
  MF627_RS23695 (MF627_004708) - 5215307..5215669 (+) 363 WP_013308297.1 cupin domain-containing protein -
  MF627_RS23700 (MF627_004709) - 5216155..5216520 (+) 366 WP_250268990.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15514.46 Da        Isoelectric Point: 5.7069

>NTDB_id=692156 MF627_RS23670 WP_250267304.1 5211732..5212160(+) (nucA/comI) [Paenibacillus polymyxa strain R 4.24]
MIRGIARGLIVFLLVAIFSVQGVFAEPVSRSVQAATGYTLEFPSSRYPETGAHIRDALAAGHSAVCTNDRDGAEENRKES
LKGYPTKKGYDRDEWPMAMCAEGGEGADIKYISPKDNRGAGSWVGHKLDEYADETKVEFIVK

Nucleotide


Download         Length: 429 bp        

>NTDB_id=692156 MF627_RS23670 WP_250267304.1 5211732..5212160(+) (nucA/comI) [Paenibacillus polymyxa strain R 4.24]
ATGATCAGAGGAATCGCGCGAGGATTAATTGTATTTTTGTTGGTAGCTATCTTTTCCGTACAAGGTGTTTTTGCAGAACC
AGTTTCAAGAAGTGTACAAGCAGCAACTGGGTATACGTTGGAGTTCCCAAGTTCACGCTATCCCGAAACCGGAGCACACA
TTAGAGATGCACTAGCAGCCGGACATTCTGCTGTTTGCACGAATGACAGAGACGGAGCCGAAGAAAACAGAAAGGAGTCA
CTCAAGGGCTATCCAACTAAAAAAGGATATGACCGCGATGAATGGCCTATGGCGATGTGTGCAGAAGGTGGAGAGGGCGC
GGATATAAAGTACATAAGCCCGAAGGATAACCGTGGAGCTGGATCGTGGGTAGGTCACAAGTTGGATGAATATGCAGACG
AAACAAAAGTTGAATTTATCGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

70.192

73.239

0.514