Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   N6H00_RS21955 Genome accession   NZ_CP114036
Coordinates   5186966..5188924 (+) Length   652 a.a.
NCBI ID   WP_329618546.1    Uniprot ID   -
Organism   Streptomyces sp. S465     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5181966..5193924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6H00_RS21935 (N6H00_21935) - 5182763..5183449 (-) 687 WP_268973515.1 DUF2993 domain-containing protein -
  N6H00_RS21940 (N6H00_21940) - 5183534..5184817 (-) 1284 WP_268973516.1 hypothetical protein -
  N6H00_RS21945 (N6H00_21945) - 5184829..5185104 (-) 276 WP_268973517.1 MoaD/ThiS family protein -
  N6H00_RS21950 (N6H00_21950) rcrP 5185227..5186969 (+) 1743 WP_268973518.1 ABC transporter ATP-binding protein Regulator
  N6H00_RS21955 (N6H00_21955) rcrQ 5186966..5188924 (+) 1959 WP_329618546.1 ABC transporter ATP-binding protein Regulator
  N6H00_RS21960 (N6H00_21960) - 5189097..5190071 (-) 975 WP_268973520.1 alpha/beta hydrolase -
  N6H00_RS21965 (N6H00_21965) - 5190326..5191138 (+) 813 WP_268973521.1 response regulator transcription factor -
  N6H00_RS21970 (N6H00_21970) - 5191162..5192184 (+) 1023 WP_268973522.1 LacI family DNA-binding transcriptional regulator -
  N6H00_RS21975 (N6H00_21975) - 5192715..5193827 (+) 1113 WP_268973523.1 trypsin-like peptidase domain-containing protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 70746.21 Da        Isoelectric Point: 6.6326

>NTDB_id=692155 N6H00_RS21955 WP_329618546.1 5186966..5188924(+) (rcrQ) [Streptomyces sp. S465]
MSGTTAPRRGPAPAAGPTRFMGGQPTERSMDFRGSSRRLLARLRPERGIALLVLALCTVSIGLSVAGPKILGEATDLIFA
GIVGRQLPDGVSKEQAVQRLRDRDQGTVADMVASMDVTPGQGIDFHAVGTVLLWVTALYAVASLLNLVQARVATAVVQRA
VFRLREDVEHKLARLPLSYFDRQSRGEVLSRATNDIDNIQQTLQQTLSQIMASLLTIVGVLAVMFWISPLLALVALVTVP
VSVWVTTRIGKRAQPQFVAQWKTTGTLNAHVEEMYTGHSLVKVFGREKESAREFREQNDKLYEAGFRAQFISGLIQPAMM
FIGNLNYVLVAVVGGLRVATGALSIGDVQAFVQYSRQFSQPLTQVASMANLVQSGVASAERVFELLDAPEQSAEPVDARR
PEAVRGRVAFEQVSFRYQPDKPLIDGLSLSVRPGQTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAQMTREEL
RSHIGMVLQDTWLFGGTIAENIAYGAREASFEEIVAAAKATYVDRFVRMLPDGYDTVIDEEGSNVSAGEKQLITIARAFL
SEPSILVLDEATSSVDTRTEVLIQRAMASLRSGRTSFVIAHRLSTIRDADVILVMEAGRIVEQGSHETLLAAGGAYARLY
ASQFAEPVAEAE

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=692155 N6H00_RS21955 WP_329618546.1 5186966..5188924(+) (rcrQ) [Streptomyces sp. S465]
ATGAGCGGCACCACGGCCCCCCGGAGGGGGCCGGCGCCCGCCGCCGGGCCCACGCGCTTCATGGGCGGGCAGCCGACCGA
GCGGTCCATGGACTTCCGCGGCTCCAGTCGCCGGCTGCTGGCCCGGCTGCGCCCCGAGCGCGGTATCGCGCTGCTGGTGC
TCGCGCTGTGCACGGTCAGCATCGGCCTGTCGGTGGCGGGCCCGAAGATCCTCGGCGAGGCCACCGACCTGATCTTCGCG
GGCATCGTCGGACGGCAGCTGCCCGACGGCGTCAGCAAGGAGCAGGCCGTCCAGCGGCTGCGCGACCGGGACCAGGGCAC
GGTCGCCGACATGGTCGCCTCGATGGACGTCACCCCCGGCCAGGGCATCGACTTCCACGCGGTCGGCACCGTGCTGCTGT
GGGTCACGGCGCTGTACGCCGTCGCCTCGCTGCTGAACCTCGTCCAGGCGCGGGTCGCCACGGCCGTCGTCCAGCGCGCG
GTCTTCCGGCTGCGCGAGGACGTGGAGCACAAGCTGGCGCGGCTGCCGCTGTCGTACTTCGACCGGCAGTCGCGCGGTGA
GGTGCTCTCCCGCGCCACCAACGACATCGACAACATCCAGCAGACGCTCCAGCAGACCCTCAGCCAGATCATGGCCTCAC
TGCTGACGATCGTGGGCGTGCTGGCGGTGATGTTCTGGATCTCGCCGCTGCTGGCGCTGGTGGCGCTGGTCACCGTCCCG
GTCTCGGTCTGGGTCACCACGCGCATCGGCAAACGCGCCCAGCCGCAGTTCGTCGCCCAGTGGAAGACCACGGGCACGCT
CAACGCCCATGTCGAGGAGATGTACACCGGCCACTCGCTGGTGAAGGTCTTCGGGCGGGAGAAGGAGTCCGCGCGAGAGT
TCCGGGAGCAGAACGACAAGCTCTACGAGGCGGGGTTCCGGGCCCAGTTCATCTCCGGGCTGATCCAGCCCGCGATGATG
TTCATCGGCAACCTCAACTACGTACTGGTGGCCGTGGTCGGCGGGCTCCGGGTGGCCACGGGGGCGCTGTCGATCGGCGA
CGTCCAGGCGTTCGTCCAGTACTCCCGGCAGTTCAGCCAGCCGCTCACCCAGGTGGCCTCCATGGCCAACCTGGTGCAGT
CGGGCGTGGCCTCCGCCGAACGGGTCTTCGAGCTGCTGGACGCGCCCGAGCAGAGCGCGGAGCCGGTGGACGCGCGGCGG
CCGGAGGCGGTGCGGGGGCGGGTCGCGTTCGAGCAGGTCTCCTTCCGCTACCAGCCGGACAAGCCGCTCATCGACGGCCT
GTCGCTGTCGGTGCGGCCGGGGCAGACCGTGGCCATCGTCGGCCCGACCGGCGCCGGGAAGACCACGCTGGTCAATCTGC
TGATGCGGTTCTACGAGGTCAGCGGCGGCCGGATCACGCTGGACGGGGTGGACATCGCCCAGATGACACGGGAGGAGCTG
CGCTCCCATATCGGGATGGTGCTCCAGGACACCTGGCTCTTCGGCGGCACGATCGCCGAGAACATCGCCTACGGCGCGCG
GGAGGCGAGCTTCGAGGAGATCGTGGCGGCGGCGAAGGCCACCTATGTGGACCGCTTCGTACGGATGCTGCCGGACGGCT
ACGACACGGTGATCGACGAAGAGGGGTCCAACGTCAGCGCCGGGGAGAAGCAGCTGATCACGATCGCCCGCGCGTTCCTC
TCGGAGCCGTCGATCCTGGTGCTGGACGAGGCCACCAGCTCGGTCGACACCCGGACCGAGGTCCTCATCCAGCGGGCGAT
GGCCTCGCTGCGGAGCGGCCGTACGAGCTTCGTGATCGCGCACCGGCTGTCGACCATCCGCGACGCGGACGTGATCCTGG
TGATGGAGGCGGGGCGGATCGTGGAGCAGGGCTCCCACGAGACGCTCCTGGCGGCCGGTGGCGCGTATGCCCGGCTCTAC
GCCTCCCAGTTCGCCGAGCCGGTGGCCGAAGCGGAGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(425-573)

ABC transporter transmembrane region (ABC_membrane)

(69-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.224

95.245

0.393