Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   N6H00_RS21950 Genome accession   NZ_CP114036
Coordinates   5185227..5186969 (+) Length   580 a.a.
NCBI ID   WP_268973518.1    Uniprot ID   -
Organism   Streptomyces sp. S465     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5180227..5191969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6H00_RS21915 (N6H00_21915) - 5180349..5180714 (+) 366 WP_268973513.1 DsrE family protein -
  N6H00_RS21920 (N6H00_21920) - 5180743..5181000 (-) 258 WP_014053929.1 DUF3099 domain-containing protein -
  N6H00_RS21925 (N6H00_21925) - 5181167..5181454 (-) 288 WP_006603933.1 DUF1416 domain-containing protein -
  N6H00_RS21930 (N6H00_21930) - 5181485..5182324 (-) 840 WP_268973514.1 sulfurtransferase -
  N6H00_RS21935 (N6H00_21935) - 5182763..5183449 (-) 687 WP_268973515.1 DUF2993 domain-containing protein -
  N6H00_RS21940 (N6H00_21940) - 5183534..5184817 (-) 1284 WP_268973516.1 hypothetical protein -
  N6H00_RS21945 (N6H00_21945) - 5184829..5185104 (-) 276 WP_268973517.1 MoaD/ThiS family protein -
  N6H00_RS21950 (N6H00_21950) rcrP 5185227..5186969 (+) 1743 WP_268973518.1 ABC transporter ATP-binding protein Regulator
  N6H00_RS21955 (N6H00_21955) rcrQ 5186966..5188924 (+) 1959 WP_329618546.1 ABC transporter ATP-binding protein Regulator
  N6H00_RS21960 (N6H00_21960) - 5189097..5190071 (-) 975 WP_268973520.1 alpha/beta hydrolase -
  N6H00_RS21965 (N6H00_21965) - 5190326..5191138 (+) 813 WP_268973521.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 62639.88 Da        Isoelectric Point: 6.1794

>NTDB_id=692154 N6H00_RS21950 WP_268973518.1 5185227..5186969(+) (rcrP) [Streptomyces sp. S465]
MLVRLIRAYLRPYTRTITLIVLLQLVQTLATLYLPTLNADIIDSGVVTGDTGYILRVGGLMTAVTLVQIVCAAGAVYFSA
RTSMALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQLLCLLSFTLMVSAPIMCVGGVVMALNQDVPLSGL
LLLIVPTLGLVVTLIVRRMRPLFRDVQARIDTVNRVLREQITGIRVIRAFVRDTHERDRFTAANTGLMDVSLRAGRLMSL
MFPVVMLVVNLSSVAVVWFGGQRIDSGGMQVGALTAYLSYLMQILTSVMMATFMFMMVPRAEVCAERIQEVLDTETSVMP
PLQPVAPAPAAAGRGLLELRGVEFRYPGADEPVLRDISLIARPGRTTAVIGSTGSGKSTLLGLVPRLFDATDGSVHIDGV
DVRDLDPEVMARTIGLVPQKPYLFSGTVASNLRYGNPDATDEELWQALETAQAREFVAAMEGGLDAPIAQGGTNVSGGQR
QRLAIARALVRKPSVYLFDDSFSALDYATDARLRAALANETEDTTVVIVAQRVSTIRSADLIVVLDAGRIVGAGTHGELM
AGNETYREIVLSQLTEQEAA

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=692154 N6H00_RS21950 WP_268973518.1 5185227..5186969(+) (rcrP) [Streptomyces sp. S465]
GTGCTGGTACGACTGATACGGGCGTATCTGAGGCCCTATACCCGAACGATCACGTTGATCGTTTTATTACAGCTGGTACA
GACGCTCGCCACCCTCTACCTGCCCACGCTGAACGCGGACATCATCGACAGCGGAGTGGTCACGGGCGACACCGGCTACA
TCCTCCGTGTCGGCGGGCTCATGACCGCCGTCACACTCGTCCAGATCGTGTGCGCCGCGGGCGCCGTCTACTTCAGCGCC
CGCACCTCCATGGCGCTCGGCCGTGATGTGCGCGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGGTGGG
CCACTTCGGGGCGCCGTCCCTGATCACCCGCACCACCAACGATGTGCAGCAGGTGCAGCTGCTGTGCCTGCTGTCCTTCA
CGCTGATGGTCTCGGCGCCGATCATGTGCGTGGGCGGCGTCGTCATGGCGCTCAACCAGGACGTTCCCCTGTCCGGGCTG
CTCCTGCTCATCGTGCCGACCCTGGGCCTCGTCGTCACGCTCATCGTCCGCCGGATGCGGCCGCTGTTCCGCGACGTCCA
GGCGCGCATCGACACCGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCATCCGGGTCATCCGCGCCTTCGTCCGCGACA
CCCATGAGCGCGACCGCTTCACCGCCGCCAACACCGGGCTGATGGATGTCTCGCTGCGCGCCGGGCGGCTGATGTCGCTG
ATGTTCCCGGTCGTGATGCTGGTGGTGAACCTGTCCAGCGTCGCGGTCGTCTGGTTCGGCGGACAGCGCATCGACAGCGG
CGGTATGCAGGTCGGCGCGCTGACCGCGTACCTCAGCTATCTGATGCAGATCCTGACGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGAGGGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCGAGACCAGCGTCATGCCG
CCGCTTCAGCCCGTCGCGCCCGCGCCCGCGGCCGCCGGACGGGGGCTGCTGGAGCTGCGGGGGGTGGAGTTCCGCTACCC
GGGGGCCGACGAGCCCGTGCTGCGCGACATCTCGCTGATCGCCCGGCCCGGCCGGACCACCGCCGTCATCGGCTCGACCG
GCAGCGGCAAGTCGACCCTGCTGGGGCTGGTGCCGCGGCTGTTCGACGCGACCGACGGCAGCGTCCACATCGACGGGGTG
GACGTGCGCGACCTCGACCCGGAGGTGATGGCCAGGACCATCGGGCTCGTCCCGCAGAAGCCGTATCTCTTCTCCGGCAC
GGTCGCCTCGAACCTGCGGTACGGCAATCCCGACGCCACCGACGAGGAGCTGTGGCAGGCCCTGGAGACCGCCCAGGCGC
GGGAGTTCGTGGCGGCCATGGAGGGCGGTCTGGACGCCCCGATCGCCCAGGGCGGGACCAACGTGTCCGGCGGTCAGCGG
CAGCGGCTGGCGATCGCCCGCGCCCTGGTCCGCAAGCCGTCCGTCTACCTCTTCGACGACTCCTTCTCCGCGCTGGACTA
CGCCACCGACGCCCGGCTGAGAGCGGCGCTCGCGAACGAGACGGAGGACACGACGGTCGTCATCGTCGCCCAGCGGGTGT
CCACCATCCGGAGCGCCGATCTGATCGTGGTGCTCGACGCGGGGCGGATTGTCGGCGCCGGAACCCACGGCGAGCTGATG
GCCGGCAATGAGACCTACCGCGAGATCGTGCTCTCCCAGCTCACCGAACAGGAGGCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(354-501)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.421

90

0.364