Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MF627_RS18065 Genome accession   NZ_CP097769
Coordinates   3952548..3953921 (-) Length   457 a.a.
NCBI ID   WP_013312184.1    Uniprot ID   A0A0M1Q9A3
Organism   Paenibacillus polymyxa strain R 4.24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3947548..3958921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF627_RS18040 (MF627_003579) ispF 3948138..3948614 (-) 477 WP_025723806.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MF627_RS18045 (MF627_003580) ispD 3948611..3949309 (-) 699 WP_039274950.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MF627_RS18050 (MF627_003581) - 3949379..3950464 (-) 1086 WP_039274953.1 PIN/TRAM domain-containing protein -
  MF627_RS18055 (MF627_003582) pssA 3950658..3951404 (-) 747 WP_025723803.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MF627_RS18060 (MF627_003583) disA 3951459..3952535 (-) 1077 WP_013312183.1 DNA integrity scanning diadenylate cyclase DisA -
  MF627_RS18065 (MF627_003584) radA 3952548..3953921 (-) 1374 WP_013312184.1 DNA repair protein RadA Machinery gene
  MF627_RS18070 (MF627_003585) clpC 3954162..3956606 (-) 2445 WP_023990572.1 ATP-dependent protease ATP-binding subunit ClpC -
  MF627_RS18075 (MF627_003586) - 3956651..3957715 (-) 1065 WP_039274956.1 protein arginine kinase -
  MF627_RS18080 (MF627_003587) - 3957744..3958268 (-) 525 WP_023990574.1 UvrB/UvrC motif-containing protein -
  MF627_RS18085 (MF627_003588) - 3958338..3958802 (-) 465 WP_013312188.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49244.92 Da        Isoelectric Point: 6.7620

>NTDB_id=692144 MF627_RS18065 WP_013312184.1 3952548..3953921(-) (radA) [Paenibacillus polymyxa strain R 4.24]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKETRILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVSNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHF
PSPRRMGTGVDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=692144 MF627_RS18065 WP_013312184.1 3952548..3953921(-) (radA) [Paenibacillus polymyxa strain R 4.24]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACGGAATGTGGTTATGAATCGCCCAAATGGTACGGAAAATGTCCTGGATG
CCAGGCATGGAATTCCATGGTCGAAGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGGTCTTCCCTTCTTACTCATA
GCACAAAAGACAAGCCACTTCCTATTATAGAGGTGGAGAGTGGCAAAGAAACACGAATTTTGACGGGAATTGGCGAATTG
AATCGAGTACTCGGTGGAGGTGTGGTGCCGGGTTCACTCGTTTTGGTGGGCGGTGATCCGGGAATCGGTAAATCTACGCT
TATGCTGCAAACATCTAATGAACTGGCTTTAACTGGTTTAAAGGTGCTGTACGTGTCTGGTGAGGAATCTGTCCGTCAAA
CGAAACTCCGTGCAGATCGGCTCGGTGCCTTGTCCCCCAGCCTATACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCGGTGGACAGCTTGAAGCCGGAGTTTTTGGTCATCGACTCGATACAGACTGTATATTTGCCTGAGGTGACGAGTGC
ACCAGGTAGTGTGGCTCAGGTGCGGGAGTGTACTTCACGCTTTATGCGAATTGCCAAGGGGCTAGGTATTGCTACGGTAT
TGGTAGGACATGTGACCAAGGAAGGGGCCATTGCAGGTCCGCGTTTGTTGGAGCATATGGTTGATTGTGTACTTTACTTT
GAAGGAGAGCGTCACCATACGTATCGGCTTTTGCGTGCAGTTAAAAATCGTTTCGGTTCTACAAATGAAATTGGTATTTT
TGAAATGGCTGAAAGCGGTTTGCGTGAGGTGTCGAATCCTTCTGAACTTTTCCTGTCTGAACGACCACTGGGTGTGGCAG
GTTCTACTGTTGTAGCCAGTATGGAAGGAACCCGACCTGTATTGGTTGAACTGCAAGCATTGATTGCAGCTACACATTTT
CCCTCTCCACGCCGAATGGGCACAGGAGTCGACCATCATCGAATGGGATTAATCATAGCCGTGCTAGAAAAGCGGATGGG
CATGTTTTTGCAAAACCAGGACGCTTATCTCAACGTAGCCGGAGGCGTGAAGTTGGATGAACCAGCGGTGGATTTGGCTA
TAGCTGTGAGTATTGCTTCCAGCTTTAGGGATGCTCCTACAAAGCCGTATGATGTGATTTTTGGCGAGGTGGGACTGACA
GGTGAGGTGCGCGCGGTATCCCGAGCAGAACAGCGAGTACGAGAAGCGGAGAAACTAGGTTTCAAACGAGTGATCATGCC
GGAGAAAAGCTTGAAGGGCTGGACACATCCGAAAGGGATACAAATTATAGGAGTAGGAACGGTGGCAGATGCACTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q9A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.031

100

0.672
  radA Streptococcus pneumoniae Rx1

58.85

98.906

0.582
  radA Streptococcus pneumoniae D39

58.85

98.906

0.582
  radA Streptococcus pneumoniae R6

58.85

98.906

0.582
  radA Streptococcus pneumoniae TIGR4

58.85

98.906

0.582
  radA Streptococcus mitis NCTC 12261

58.85

98.906

0.582
  radA Streptococcus mitis SK321

58.628

98.906

0.58