Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MF627_RS17155 Genome accession   NZ_CP097769
Coordinates   3748327..3749280 (-) Length   317 a.a.
NCBI ID   WP_129550005.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 4.24     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3743327..3754280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF627_RS17130 (MF627_003397) - 3743796..3744707 (-) 912 WP_250266704.1 aldo/keto reductase -
  MF627_RS17135 (MF627_003398) - 3744865..3745608 (-) 744 WP_250266705.1 alpha/beta hydrolase -
  MF627_RS17140 (MF627_003399) - 3745642..3746622 (-) 981 WP_250266706.1 siderophore ABC transporter substrate-binding protein -
  MF627_RS17145 (MF627_003400) - 3746635..3747393 (-) 759 WP_250266707.1 ABC transporter ATP-binding protein -
  MF627_RS17150 (MF627_003401) - 3747387..3748337 (-) 951 WP_209940458.1 iron chelate uptake ABC transporter family permease subunit -
  MF627_RS17155 (MF627_003402) ceuB 3748327..3749280 (-) 954 WP_129550005.1 ABC transporter permease Machinery gene
  MF627_RS17160 (MF627_003403) - 3749605..3750282 (+) 678 WP_250268965.1 response regulator transcription factor -
  MF627_RS17165 (MF627_003404) - 3750284..3751201 (+) 918 WP_250266708.1 sensor histidine kinase -
  MF627_RS17170 (MF627_003405) - 3751310..3751987 (+) 678 WP_250266709.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34746.75 Da        Isoelectric Point: 9.9012

>NTDB_id=692143 MF627_RS17155 WP_129550005.1 3748327..3749280(-) (ceuB) [Paenibacillus polymyxa strain R 4.24]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=692143 MF627_RS17155 WP_129550005.1 3748327..3749280(-) (ceuB) [Paenibacillus polymyxa strain R 4.24]
ATGAAATTACGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGATTGATCATGCAGCAGCTTACCCGGAACCGATTTGTATCGCCCACCACCGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGAATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGCATGTATATGGGGGATAATCTGAAAAAAAGTCTGGCTCATAC
AGCGATCCTGGGCGCCGTCTTTGTGCTGTTTTGCGACATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508