Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MF627_RS07435 Genome accession   NZ_CP097769
Coordinates   1651075..1652925 (+) Length   616 a.a.
NCBI ID   WP_250268344.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 4.24     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1646075..1657925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF627_RS07415 (MF627_001473) - 1646848..1647069 (+) 222 Protein_1445 NAD(P)H-binding protein -
  MF627_RS07420 (MF627_001474) - 1647243..1648265 (+) 1023 WP_250268341.1 NADH:flavin oxidoreductase/NADH oxidase -
  MF627_RS07425 (MF627_001475) - 1648834..1649244 (+) 411 WP_250268342.1 MarR family winged helix-turn-helix transcriptional regulator -
  MF627_RS07430 (MF627_001476) rcrP 1649319..1651082 (+) 1764 WP_250268343.1 ABC transporter ATP-binding protein Regulator
  MF627_RS07435 (MF627_001477) rcrQ 1651075..1652925 (+) 1851 WP_250268344.1 ABC transporter ATP-binding protein Regulator
  MF627_RS07440 (MF627_001478) - 1653046..1653354 (+) 309 WP_061830895.1 hypothetical protein -
  MF627_RS07445 (MF627_001479) - 1653624..1654076 (+) 453 WP_250268345.1 hypothetical protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67961.61 Da        Isoelectric Point: 6.2783

>NTDB_id=692131 MF627_RS07435 WP_250268344.1 1651075..1652925(+) (rcrQ) [Paenibacillus polymyxa strain R 4.24]
MDKNEHTVDSQQMKMNQRGPMGKGPAGGKGTGEKANNFKKTISQLVSYSKAYVLMIILAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIIATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTIKLDTAKGDVEFKHVRFGYNADRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAACRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=692131 MF627_RS07435 WP_250268344.1 1651075..1652925(+) (rcrQ) [Paenibacillus polymyxa strain R 4.24]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGCGAGGTCCCATGGGTAAAGGACCCGCGGG
GGGCAAGGGTACTGGTGAAAAAGCGAATAATTTTAAAAAGACCATCAGCCAGCTTGTATCCTACAGCAAGGCCTATGTGC
TTATGATTATACTAGCTATGGTACTGGCCCTGGTCGGCTCCACCCTCAACGTGATTGGCCCCGATAAGCTCAGCGATATT
GCCAACCTGATTCAGGAAGGAATCGTGACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATCTTTAACTATTTCCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAACTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGCTACGGTAATGTGCTTAGCCGT
GTAACCAACGATGTCGACACCATTGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGTGCGCTGGCTACCTTTGT
GGGCGCCTTGATTATGATGCTGTATACGAACTGGATCATGACCGTTACCGGAATTATAGCTACGCTGATCGGCTTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTTGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACTTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCTTATATACAAATGCATGGAAGTCCCAATTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTCGCGGTCTGTGTCGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACTATTGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAGTCGGCGGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCATAAAGCTGGACACTGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGCTATAATGCAGATCGTATGATCATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTCGGTCCGACAGGCGCTGGTAAGACCACGCTCGTGAATTTGCTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGCACCCCGATTAGCCAATTAACGCGCGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACCGAT
GAGCAGGTGGAAGCTGCATGTAGAGCGGTGGGTCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGCT
GGATGACAAAGCCAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCGATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTCGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGACGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGTTGGCTAAAGGCGGCTTCTATGCCGATCTATACAATAGTCAGTTTGAAC
ATGCATCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(57-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.499

93.669

0.529