Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MF627_RS07430 Genome accession   NZ_CP097769
Coordinates   1649319..1651082 (+) Length   587 a.a.
NCBI ID   WP_250268343.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 4.24     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1644319..1656082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF627_RS07400 (MF627_001470) aiiA 1644498..1645256 (-) 759 WP_250268336.1 quorum-quenching N-acyl homoserine lactonase AiiA -
  MF627_RS07405 (MF627_001471) - 1645332..1645670 (+) 339 WP_250268337.1 hypothetical protein -
  MF627_RS07410 (MF627_001472) - 1645727..1645987 (+) 261 WP_250268339.1 hypothetical protein -
  MF627_RS07415 (MF627_001473) - 1646848..1647069 (+) 222 Protein_1445 NAD(P)H-binding protein -
  MF627_RS07420 (MF627_001474) - 1647243..1648265 (+) 1023 WP_250268341.1 NADH:flavin oxidoreductase/NADH oxidase -
  MF627_RS07425 (MF627_001475) - 1648834..1649244 (+) 411 WP_250268342.1 MarR family winged helix-turn-helix transcriptional regulator -
  MF627_RS07430 (MF627_001476) rcrP 1649319..1651082 (+) 1764 WP_250268343.1 ABC transporter ATP-binding protein Regulator
  MF627_RS07435 (MF627_001477) rcrQ 1651075..1652925 (+) 1851 WP_250268344.1 ABC transporter ATP-binding protein Regulator
  MF627_RS07440 (MF627_001478) - 1653046..1653354 (+) 309 WP_061830895.1 hypothetical protein -
  MF627_RS07445 (MF627_001479) - 1653624..1654076 (+) 453 WP_250268345.1 hypothetical protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64794.09 Da        Isoelectric Point: 7.0968

>NTDB_id=692130 MF627_RS07430 WP_250268343.1 1649319..1651082(+) (rcrP) [Paenibacillus polymyxa strain R 4.24]
MLKIFKYLKKNEWMLVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAVLILMLSVIVVFALPSFQRIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYCIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIMEVLNTE
SSIVNGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKQGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRDYNQQALHNKIGYVPQRAVLFHGTVVSNVSYGDNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=692130 MF627_RS07430 WP_250268343.1 1649319..1651082(+) (rcrP) [Paenibacillus polymyxa strain R 4.24]
ATGCTAAAGATATTCAAATATCTCAAGAAAAATGAATGGATGCTCGTACTTTGCAGCCTAGCTTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTGCCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACGGAAGGAACGCCTGTGTCCGAAC
TGCTGATTCCCGGCAGTTACATGTTGTTTTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTGGGCTATTTCGCGGCA
AAGGTGGCTGCTGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCTATGGAAGAGATGAA
CAGCTTTTCGACGGCAAGCCTCATTACCCGCTCCACGAACGATGTTACGCAGATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCACCTATTCTGGCCGTATGGGCTATTGTGAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCC
ACAGGAGCGGCCGTGGCTGTTCTGATTCTAATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTTCAGAGAATCCA
GCGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGATCGGACTTCGGGTAGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTTGAGTTGACGAATACAAACCTGTTCGCGAACCGATTAATGACGATG
ATTGGCCCAGGTATGACCTTTATTATGTCAGGTCTGAGTGTCTCTATCTATTGTATCGGCGCTTACCTGATTAACGGGGC
GGCCGTACCAGACCGCATCACGTTGTTCTCCAATATGGTTGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATATTCATTCTGATGCCTCGCGCCTCGATCTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGCATCGTTAACGGGCATGAGACGACTGGAGAAGAGAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGACGCGGAGGAGGCCGTGCTTCGCAACATTAGCTTTACGGCGAAACAAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGAAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTATGATGTGACCGAGGGAGAGGTACTCGTGGAT
GGTGTGAATGTCAGGGACTATAATCAGCAGGCACTCCATAACAAAATCGGGTATGTCCCCCAGAGAGCTGTACTGTTCCA
CGGTACGGTTGTATCCAACGTTTCGTATGGCGATAACGGAAGAGCAGGAGCTTCGGAGAAACTCGTTAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTCGAAAAAATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGAGCGAACGTT
TCGGGTGGTCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAAATTTATATTTTCGATGATTCCTT
CTCGGCATTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCACGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACTATCAAAGACGCTGATCGGATTATCGTGCTGGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAAATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.588

100

0.537