Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MF628_RS26810 Genome accession   NZ_CP097767
Coordinates   5761984..5763747 (-) Length   587 a.a.
NCBI ID   WP_250271775.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 5.31     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5756984..5768747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF628_RS26785 (MF628_005332) - 5756989..5757633 (+) 645 WP_250271716.1 YczE/YyaS/YitT family protein -
  MF628_RS26790 (MF628_005333) - 5757852..5758766 (+) 915 WP_250271717.1 dihydrodipicolinate synthase family protein -
  MF628_RS26795 (MF628_005334) - 5758860..5759123 (+) 264 WP_323873373.1 EamA family transporter -
  MF628_RS26800 (MF628_005335) - 5759712..5760020 (-) 309 WP_250271772.1 hypothetical protein -
  MF628_RS26805 (MF628_005336) rcrQ 5760141..5761991 (-) 1851 WP_250271773.1 ABC transporter ATP-binding protein Regulator
  MF628_RS26810 (MF628_005337) rcrP 5761984..5763747 (-) 1764 WP_250271775.1 ABC transporter ATP-binding protein Regulator
  MF628_RS26815 (MF628_005338) - 5763821..5764231 (-) 411 WP_013310356.1 MarR family winged helix-turn-helix transcriptional regulator -
  MF628_RS26820 (MF628_09000) - 5764792..5764995 (-) 204 WP_250271777.1 hypothetical protein -
  MF628_RS26825 - 5765264..5765545 (-) 282 WP_416383369.1 hypothetical protein -
  MF628_RS26830 - 5765573..5765788 (-) 216 WP_323873285.1 hypothetical protein -
  MF628_RS26835 (MF628_005341) - 5765821..5766843 (-) 1023 WP_250271779.1 NADH:flavin oxidoreductase/NADH oxidase -
  MF628_RS26845 (MF628_005343) - 5767540..5768451 (-) 912 WP_416383370.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64756.04 Da        Isoelectric Point: 7.3661

>NTDB_id=692122 MF628_RS26810 WP_250271775.1 5761984..5763747(-) (rcrP) [Paenibacillus polymyxa strain R 5.31]
MLKIFKYLKKNEWMLVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNNFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAALILMLSVIVVFALPSFQRIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYCIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIMEVLNTE
SSIINGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYNQQALHNKIGYVPQSAVLFNGTVISNVSYGDNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=692122 MF628_RS26810 WP_250271775.1 5761984..5763747(-) (rcrP) [Paenibacillus polymyxa strain R 5.31]
ATGCTAAAGATATTCAAATATCTCAAGAAAAATGAATGGATGCTTGTGCTTTGCAGCCTAGCCTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTACCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACGGAAGGAACGCCTGTGTCCGAAC
TGCTGATTCCCGGCAGTTACATGTTGTTTTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTGGGCTATTTCGCGGCA
AAGGTGGCTGCAGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCGATGGAAGAGATGAA
CAACTTTTCGACGGCAAGCCTCATTACCCGCTCCACGAACGATGTTACGCAGATTCAAACGGTGGTTGCGCTGGGGCTTC
AGGTGATCATCAAGGCACCGATTCTGGCCGTGTGGGCCATTGTGAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCC
ACAGGAGCGGCCGTGGCTGCTCTGATCCTGATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTCCAGAGAATCCA
GCGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGATCGGACTTCGGGTAGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTCGAGTTGACGAATACAAACCTGTTCGCGAACCGATTAATGACGATG
ATTGGCCCAGGTATGACCTTTATTATGTCAGGTCTGAGTGTCTCTATCTATTGTATCGGCGCTTACCTGATTAACGGGGC
GGCCGTACCAGACCGCATCACGCTGTTCTCCAATATGGTCGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATATTCATCCTGATGCCTCGCGCCTCGATCTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGCATCATTAACGGGCATGAGACGACTGGAGAAGAGAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGACGCGGAGGAGGCCGTGCTTCGCAATATCAGCTTCACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGCAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTATGATGTGACCGAGGGAGAGGTACTCGTGGAT
GGTGTGAATGTCAGGAACTATAATCAGCAGGCACTCCATAACAAAATCGGGTATGTTCCCCAGAGTGCTGTACTTTTCAA
CGGTACGGTGATATCCAACGTTTCGTACGGTGATAACGGAAGAGCAGGAGCTTCGGAGAAACTTGTCAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTCGAAAAAATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAAATTTATATTTTCGATGATTCCTT
CTCGGCACTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCACGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACGATTAAAGACGCTGATCGGATTATCGTGCTGGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAGATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.254

100

0.533