Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MF628_RS26805 Genome accession   NZ_CP097767
Coordinates   5760141..5761991 (-) Length   616 a.a.
NCBI ID   WP_250271773.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 5.31     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5755141..5766991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF628_RS26770 (MF628_005329) - 5755260..5755601 (-) 342 WP_025723001.1 DMT family transporter -
  MF628_RS26775 (MF628_005330) - 5755877..5756395 (-) 519 WP_250274071.1 GNAT family N-acetyltransferase -
  MF628_RS26780 (MF628_005331) - 5756422..5756874 (-) 453 WP_076293702.1 MarR family winged helix-turn-helix transcriptional regulator -
  MF628_RS26785 (MF628_005332) - 5756989..5757633 (+) 645 WP_250271716.1 YczE/YyaS/YitT family protein -
  MF628_RS26790 (MF628_005333) - 5757852..5758766 (+) 915 WP_250271717.1 dihydrodipicolinate synthase family protein -
  MF628_RS26795 (MF628_005334) - 5758860..5759123 (+) 264 WP_323873373.1 EamA family transporter -
  MF628_RS26800 (MF628_005335) - 5759712..5760020 (-) 309 WP_250271772.1 hypothetical protein -
  MF628_RS26805 (MF628_005336) rcrQ 5760141..5761991 (-) 1851 WP_250271773.1 ABC transporter ATP-binding protein Regulator
  MF628_RS26810 (MF628_005337) rcrP 5761984..5763747 (-) 1764 WP_250271775.1 ABC transporter ATP-binding protein Regulator
  MF628_RS26815 (MF628_005338) - 5763821..5764231 (-) 411 WP_013310356.1 MarR family winged helix-turn-helix transcriptional regulator -
  MF628_RS26820 (MF628_09000) - 5764792..5764995 (-) 204 WP_250271777.1 hypothetical protein -
  MF628_RS26825 - 5765264..5765545 (-) 282 WP_416383369.1 hypothetical protein -
  MF628_RS26830 - 5765573..5765788 (-) 216 WP_323873285.1 hypothetical protein -
  MF628_RS26835 (MF628_005341) - 5765821..5766843 (-) 1023 WP_250271779.1 NADH:flavin oxidoreductase/NADH oxidase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67891.52 Da        Isoelectric Point: 6.2786

>NTDB_id=692121 MF628_RS26805 WP_250271773.1 5760141..5761991(-) (rcrQ) [Paenibacillus polymyxa strain R 5.31]
MDKNEHTVDSQQMKMNQVGPMGKGPAGGKGVGEKANNFKKTIRQLVSYSKAYVPMIVLAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVFVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIVATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTISIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTAKLDTAKGEVEFKHVRFGYNADRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAACKAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=692121 MF628_RS26805 WP_250271773.1 5760141..5761991(-) (rcrQ) [Paenibacillus polymyxa strain R 5.31]
ATGGATAAGAATGAACACACCGTCGATAGCCAGCAAATGAAAATGAATCAGGTAGGTCCCATGGGTAAAGGCCCTGCGGG
GGGCAAGGGTGTTGGTGAAAAAGCAAATAATTTTAAAAAGACCATCAGACAGCTTGTATCCTACAGCAAGGCCTATGTGC
CTATGATTGTACTAGCTATGGTACTGGCCCTGGTCGGCTCCACCCTCAACGTGATTGGCCCGGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTTTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATCTTTAACTATTTCCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGC
GTAACCAACGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGTGCGCTGGCTACCTTCGT
GGGCGCCTTGATTATGATGCTTTATACGAACTGGATCATGACCGTTACCGGAATTGTAGCTACGCTGATCGGCTTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATT
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCCTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGGAATT
TTGGTTATGTCGCGGTCTGTGTTGTGGGAGCTTTGCTGGTCAACCAACAGACTATAAGCATTGGAACTATTGTCGCCTTC
ATGGTGTATATTCGACTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAATCGGCCGCCGCCGC
CAGTGAACGTGTATTTGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCGCGAAGCTGGACACCGCCA
AAGGGGAAGTCGAATTCAAACATGTCCGTTTCGGCTATAATGCAGACCGTATGATTATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTCGGTCCGACAGGCGCCGGTAAGACCACGCTCGTGAATTTGCTCATGAGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACGCCGATTAGCCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACAATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACCGAT
GAGCAGGTGGAAGCTGCATGTAAAGCGGTGGGGCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGCT
GGACGACAAAGCTAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCGATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTTGATACGCGTACAGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTTATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGATGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGCTGGCTAAAGGCGGCTTCTATGCCGATCTATACAACAGTCAGTTTGAAC
ATGCATCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(58-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.153

93.669

0.526