Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MF628_RS17115 Genome accession   NZ_CP097767
Coordinates   3696096..3697049 (+) Length   317 a.a.
NCBI ID   WP_064963587.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 5.31     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3691096..3702049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF628_RS17100 (MF628_003403) - 3693392..3694069 (-) 678 WP_250270117.1 ABC transporter ATP-binding protein -
  MF628_RS17105 (MF628_003404) - 3694178..3695095 (-) 918 WP_250270118.1 sensor histidine kinase -
  MF628_RS17110 (MF628_003405) - 3695092..3695769 (-) 678 WP_250274005.1 response regulator transcription factor -
  MF628_RS17115 (MF628_003406) ceuB 3696096..3697049 (+) 954 WP_064963587.1 ABC transporter permease Machinery gene
  MF628_RS17120 (MF628_003407) - 3697039..3697989 (+) 951 WP_039273794.1 iron chelate uptake ABC transporter family permease subunit -
  MF628_RS17125 (MF628_003408) - 3697983..3698741 (+) 759 WP_250270119.1 ABC transporter ATP-binding protein -
  MF628_RS17130 (MF628_003409) - 3698754..3699734 (+) 981 WP_250270120.1 siderophore ABC transporter substrate-binding protein -
  MF628_RS17135 (MF628_003410) - 3699768..3700511 (+) 744 WP_250270121.1 alpha/beta hydrolase -
  MF628_RS17140 (MF628_003411) - 3700669..3701580 (+) 912 WP_250270122.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34732.72 Da        Isoelectric Point: 9.9012

>NTDB_id=692109 MF628_RS17115 WP_064963587.1 3696096..3697049(+) (ceuB) [Paenibacillus polymyxa strain R 5.31]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLSNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=692109 MF628_RS17115 WP_064963587.1 3696096..3697049(+) (ceuB) [Paenibacillus polymyxa strain R 5.31]
ATGAAATTGCGCTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTGTTCATCGGTGTTCATGATGTGACTCC
ACTTGATTTGTTCCACTTATCTAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTCCCACGTTTGATCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTGATCATGCAGCAGCTTACCCGGAACCGGTTTGTATCGCCCACCACTGCA
GGGACGATGGATGCGGCACGGTTAGGTGTGCTGATGGCCATTATGGTGTTTGGAGCAGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTCGCTTTAGGGGGAACGCTGATTTTCATGAAGATACTGGATAAAATCCGGTTCAAGGACCCGGTAT
TTATTCCGCTTGTCGGTCTGATGTTTGGAGGCATTTTAAATTCGGTGACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCGTTAGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCGAATTTGGGAG
TTCATTACAAGCGCACCGTCAATGTCGGGTTAGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACA
ATTCCCTTTTTGGGGCTGGTTGTACCTAATCTCGTCAGTATGTATATGGGGGATAATCTAAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTTTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAGATTTCTGTAG
GGCTTACGGTGGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508